RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA385073" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA385073 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9334775 9334775 PRJNA385073_P_NODE_9168_length_420_cov_1.579251_g9007_i0 PRJNA385073 9168 420 1.579251 6.6328542 Acropora digitifera 70779 Cnidaria other_Eukaryota 119 3.93e-22   NTclustered gi|1005425980|ref|XR_001560994.1| 70779 g9007 i0 94.872 16.1547619047619 78 0 18 3 166 241 6 81 PREDICTED: Acropora digitifera uncharacterized LOC107329384 (LOC107329384), transcript variant X7, ncRNA blastn 6785 119 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Acroporidae Acropora Acropora digitifera
13159656 13159656 PRJNA385073_P_NODE_34231_length_267_cov_2.814433_g34069_i0 PRJNA385073 34231 267 2.814433 7.51453611 Acropora millepora 45264 Cnidaria other_Eukaryota 52.8 0.024   NTclustered gi|2113918517|ref|XM_044307546.1| 45264 g34069 i0 100 0.209737827715356 28 0 10 0 191 218 1240 1267 PREDICTED: Acropora millepora TNF receptor-associated factor 5-like (LOC114953597), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Acroporidae Acropora Acropora millepora
19532008 19532008 PRJNA385073_P_NODE_45176_length_249_cov_0.875000_g45014_i0 PRJNA385073 45176 249 0.875 2.17875 Hydractinia symbiolongicarpus 13093 Cnidaria other_Eukaryota 52.8 0.023   NTclustered gi|224287098|gb|AC234868.1| 13093 g45014 i0 96.875 0.257028112449799 32 0 12 1 133 163 785 816 Hydractinia symbiolongicarpus clone YU00-066K10, complete sequence blastn 64 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydractiniidae Hydractinia Hydractinia symbiolongicarpus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;