RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA385073" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA385073 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1680545 1680545 PRJNA385073_P_NODE_24042_length_298_cov_12.080000_g23880_i0 PRJNA385073 24042 298 12.08 35.9984 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 407 5.1299999999999995e-109   NTclustered gi|2621707050|emb|OY764903.1| 2212468 g23880 i0 91.275 169.197986577181 298 26 100 0 1 298 3559019 3559316 MAG: Bryobacteraceae bacterium isolate d7944118-f527-4ba8-a886-cdd3ae4bc3f8 genome assembly, chromosome: 1 blastn 50421 407 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
4232945 4232945 PRJNA385073_P_NODE_29444_length_280_cov_3.700483_g29282_i0 PRJNA385073 29444 280 3.700483 10.3613524 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 231 3.09e-56   NTclustered gi|112980862|gb|DQ829666.1| 171953 g29282 i0 83.658 142.428571428571 257 31 90 10 27 279 348 597 Uncultured Acidobacteria bacterium clone DON18 23S ribosomal RNA gene, partial sequence blastn 39880 231 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
4232950 4232950 PRJNA385073_P_NODE_29584_length_280_cov_1.623188_g29422_i0 PRJNA385073 29584 280 1.623188 4.5449264 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 56.5 0.002   NTclustered gi|2874253692|emb|OY969418.1| 171953 g29422 i0 100 0.321428571428571 30 0 22 0 103 132 3769386 3769357 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 90 56.5 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
5510073 5510073 PRJNA385073_P_NODE_54385_length_243_cov_3.211765_g54223_i0 PRJNA385073 54385 243 3.211765 7.80458895 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 272 1.5399999999999998e-68   NTclustered gi|2874253678|emb|OY969112.1| 171953 g54223 i0 88.496 2.49794238683128 226 24 93 2 19 243 1196009 1196233 MAG: uncultured Acidobacteriota bacterium isolate MFD04212.bin.1.16 genome assembly, chromosome: 1 blastn 607 272 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
6783632 6783632 PRJNA385073_P_NODE_33926_length_268_cov_2.030769_g33764_i0 PRJNA385073 33926 268 2.030769 5.44246092 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 132 3.06e-26   NTclustered gi|2874254027|emb|OY970352.1| 171953 g33764 i0 88.288 59.4328358208955 111 12 41 1 158 267 2368111 2368001 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 15928 132 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
10610154 10610154 PRJNA385073_P_NODE_56749_length_242_cov_0.911243_g56587_i0 PRJNA385073 56749 242 0.911243 2.20520806 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 292 1.18e-74   NTclustered gi|112980852|gb|DQ829656.1| 171953 g56587 i0 88.43 94.9173553719008 242 28 100 0 1 242 1680 1439 Uncultured Acidobacteria bacterium clone DON25 23S ribosomal RNA gene, partial sequence blastn 22970 292 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
13160326 13160326 PRJNA385073_P_NODE_64051_length_212_cov_4.093525_g63889_i0 PRJNA385073 64051 212 4.093525 8.678273 Granulicella sp. 5B5 1617967 Bacteria Bacteria 135 1.8e-27   NTclustered gi|1886125103|gb|CP046444.1| 1617967 g63889 i0 79.793 1.82075471698113 193 33 90 6 17 206 2474640 2474829 Granulicella sp. 5B5 chromosome, complete genome blastn 386 135 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella Granulicella sp. 5B5
22082538 22082538 PRJNA385073_P_NODE_42678_length_250_cov_2.276836_g42516_i0 PRJNA385073 42678 250 2.276836 5.69209 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 167 7.75e-37   NTclustered gi|2874254091|emb|OY970174.1| 171953 g42516 i0 79.283 1.004 251 42 98 10 1 246 4497155 4497400 MAG: uncultured Acidobacteriota bacterium isolate MFD01275.bin.c.18 genome assembly, chromosome: 1 blastn 251 167 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;