RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA385073" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 6 ✖

bioproject 1

  • PRJNA385073 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8059593 8059593 PRJNA385073_P_NODE_53227_length_244_cov_0.900585_g53065_i0 PRJNA385073 53227 244 0.900585 2.1974274 Methanobacterium formicicum 2162 Archaea Archaea 279 9.27e-71   NTclustered gi|952971377|emb|LN734822.1| 2162 g53065 i0 87.295 2 244 31 100 0 1 244 681720 681477 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 488 279 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
14435043 14435043 PRJNA385073_P_NODE_51332_length_245_cov_0.895349_g51170_i0 PRJNA385073 51332 245 0.895349 2.19360505 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 340 4.209999999999999e-89   NTclustered gi|985614202|gb|CP010834.1| 1609968 g51170 i0 91.837 3.21632653061224 245 18 100 1 1 245 2155719 2155477 Methanobrevibacter sp. YE315, complete genome blastn 788 340 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
14435455 14435455 PRJNA385073_P_NODE_9752_length_411_cov_1.736686_g9591_i0 PRJNA385073 9752 411 1.736686 7.13777946 Methanobacterium petrolearium 710190 Archaea Archaea 638 2.38e-178   NTclustered gi|2465759960|dbj|AP027739.1| 710190 g9591 i0 94.66 44.8637469586375 412 20 100 2 1 411 2435872 2435462 Methanobacterium petrolearium NBRC 105198 DNA, complete genome blastn 18439 638 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium petrolearium
15104174 15104174 PRJNA385073_P_NODE_56852_length_242_cov_0.911243_g56690_i0 PRJNA385073 56852 242 0.911243 2.20520806 Methanobacterium 2160 Archaea Archaea 202 2.0499999999999998e-47   NTclustered gi|2465759960|dbj|AP027739.1| 710190 g56690 i0 81.855 6.13223140495868 248 38 100 7 1 242 233929 233683 Methanobacterium petrolearium NBRC 105198 DNA, complete genome blastn 1484 204 0.990196078431373 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium petrolearium
22082698 22082698 PRJNA385073_P_NODE_50698_length_246_cov_0.890173_g50536_i0 PRJNA385073 50698 246 0.890173 2.18982558 Methanosphaera sp. BMS 1789762 Archaea Archaea 52.8 0.022   NTclustered gi|1409374143|gb|CP014213.1| 1789762 g50536 i0 100 0.113821138211382 28 0 11 0 16 43 2734747 2734774 Methanosphaera sp. BMS chromosome, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. BMS
24631981 24631981 PRJNA385073_P_NODE_19220_length_323_cov_2.012000_g19058_i0 PRJNA385073 19220 323 2.012 6.49876 Methanobacterium petrolearium 710190 Archaea Archaea 580 3.129999999999999e-161   NTclustered gi|584298063|gb|KF882002.1| 710190 g19058 i0 99.071 150.882352941176 323 3 100 0 1 323 1270 1592 Methanobacterium petrolearium strain Mic5c12 23S ribosomal RNA gene, partial sequence blastn 48735 580 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium petrolearium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;