RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA385064" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA385064 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6783081 6783081 PRJNA385064_P_NODE_8146_length_161_cov_0.910714_g8021_i0 PRJNA385064 8146 161 0.910714 1.46624954 Gallus gallus 9031 Chordata Chordata 298 1.56e-76   NTclustered gi|2201708901|ref|XM_046908324.1| 9031 g8021 i0 100 2.96894409937888 161 0 100 0 1 161 7171 7331 PREDICTED: Gallus gallus paraspeckle component 1 (PSPC1), transcript variant X10, mRNA blastn 478 298 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
22752757 22752757 PRJNA385064_P_NODE_6018_length_173_cov_1.524194_g5893_i0 PRJNA385064 6018 173 1.524194 2.63685562 root 1 Root_unresolved Root_unresolved 309 7.81e-80   NTclustered gi|2904934840|gb|PQ737764.1| 10090 g5893 i0 99.412 363.78612716763 170 1 98 0 1 170 252 421 Mus musculus lncRNA174 lncRNA, complete sequence blastn 62935 309 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
23357440 23357440 PRJNA385064_P_NODE_8399_length_151_cov_4.411765_g8274_i0 PRJNA385064 8399 151 4.411765 6.66176515 Meriones unguiculatus 10047 Chordata Chordata 84.2 4.37e-12   NTclustered gi|2599565631|ref|XR_009591446.1| 10047 g8274 i0 77.931 3.05960264900662 145 25 93 5 2 141 2982 2840 PREDICTED: Meriones unguiculatus abhydrolase domain containing 11 (Abhd11), transcript variant X3, misc_RNA blastn 462 84.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Meriones Meriones unguiculatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;