RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA385064" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA385064 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11884045 11884045 PRJNA385064_P_NODE_6410_length_168_cov_0.731092_g6285_i0 PRJNA385064 6410 168 0.731092 1.22823456 Trebouxia sp. Wei 22-c 283661 Plants Plants 289 9.879999999999999e-74   NTclustered gi|49781197|gb|AY648107.1| 283661 g6285 i0 97.619 99.8869047619048 168 4 100 0 1 168 1571 1738 Trebouxia sp. Wei 22-c 26S ribosomal RNA gene, partial sequence blastn 16781 289 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. Wei 22-c
14434088 14434088 PRJNA385064_P_NODE_2792_length_265_cov_1.787037_g2667_i0 PRJNA385064 2792 265 1.787037 4.73564805 Pseudochlorella signiensis 173497 Plants Plants 375 1.2699999999999999e-99   NTclustered gi|725650714|ref|NC_025529.1| 173497 g2667 i0 94.979 115.415094339623 239 12 90 0 27 265 150269 150031 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 30585 375 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
20202045 20202045 PRJNA385064_P_NODE_5656_length_179_cov_1.476923_g5531_i0 PRJNA385064 5656 179 1.476923 2.64369217 Trebouxiophyceae 75966 Plants Plants 246 6.48e-61   NTclustered gi|725650801|ref|NC_025532.1| 3102 g5531 i0 91.573 501.620111731844 178 15 99 0 2 179 122020 121843 Ettlia pseudoalveolaris culture-collection UTEX:975 chloroplast, complete genome blastn 89790 246 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Parietochloris Parietochloris pseudoalveolaris
24631751 24631751 PRJNA385064_P_NODE_2300_length_300_cov_1.015936_g2175_i0 PRJNA385064 2300 300 1.015936 3.047808 Diplosphaera sp. (in: green algae) 2911680 Plants Plants 355 1.9e-93   NTclustered gi|2644500050|gb|PP079688.1| 2911680 g2175 i0 100 81.8866666666667 192 0 64 0 109 300 1973 1782 Diplosphaera sp. (in: green algae) isolate C3 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24566 355 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera sp. (in: green algae)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;