RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA384462" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA384462 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
405326 405326 PRJNA384462_S_NODE_15281_length_161_cov_1.267857_g15165_i0 PRJNA384462 15281 161 1.267857 2.04124977 Lubomirskia baikalensis 289074 Porifera other_Eukaryota 71.3 3.69e-8   NTclustered gi|84660245|emb|AJ872184.1| 289074 g15165 i0 93.617 1.11180124223602 47 3 29 0 106 152 1028 982 Lubomirskia baicalensis mRNA for cathepsin L (catl2 gene) blastn 179 71.3 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Spongillida Lubomirskiidae Lubomirskia Lubomirskia baikalensis
13159076 13159076 PRJNA384462_S_NODE_7731_length_202_cov_2.666667_g7615_i0 PRJNA384462 7731 202 2.666667 5.38666734 Amphimedon queenslandica 400682 Porifera other_Eukaryota 176 1e-39   NTclustered gi|1133449879|ref|XM_003383054.3| 400682 g7615 i0 84.324 8.58415841584158 185 23 90 6 15 196 366 185 PREDICTED: Amphimedon queenslandica 40S ribosomal protein S14 (LOC100636138), mRNA blastn 1734 176 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon queenslandica
24631695 24631695 PRJNA384462_S_NODE_1240_length_467_cov_1.854067_g1124_i0 PRJNA384462 1240 467 1.854067 8.65849289 Sycon ciliatum 27933 Porifera other_Eukaryota 97.1 2.07e-15   NTclustered gi|2732903977|ref|XM_065339978.1| 27933 g1124 i0 84.536 1.8865096359743 97 15 23 0 178 274 655 559 PREDICTED: Sycon ciliatum uncharacterized LOC135827489 (LOC135827489), mRNA blastn 881 97.1 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;