RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA384462" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA384462 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2955993 2955993 PRJNA384462_S_NODE_1283_length_461_cov_1.597087_g1167_i0 PRJNA384462 1283 461 1.597087 7.36257107 Apodachlya brachynema 92981 SAR_Eukaryotes SAR_Eukaryotes 217 1.5e-51   NTclustered gi|59894139|gb|AY729852.1| 92981 g1167 i0 76.322 12.4338394793926 435 86 92 15 8 432 1063 636 Apodachlya brachynema heat shock protein 90 gene, partial cds blastn 5732 217 1 Eukaryota Sar   Oomycota Saprolegniomycetes Leptomitales Leptomitaceae Apodachlya Apodachlya brachynema
15708031 15708031 PRJNA384462_S_NODE_10113_length_183_cov_1.037313_g9997_i0 PRJNA384462 10113 183 1.037313 1.89828279 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 154 4.15e-33   NTclustered gi|813138592|ref|XM_012343408.1| 695850 g9997 i0 83.333 8.45355191256831 174 21 93 7 1 170 1202 1033 Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA blastn 1547 154 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;