RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA384462" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA384462 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5509043 5509043 PRJNA384462_S_NODE_6185_length_220_cov_1.479532_g6069_i0 PRJNA384462 6185 220 1.479532 3.2549704 Pristionchus microcercus 3308705 Nematoda Nematoda 137 5.23e-28   NTclustered gi|675118993|gb|KJ877376.1| 3308705 g6069 i0 80.328 19.0590909090909 183 34 83 2 38 219 416 235 Paroigolaimella micrura large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 4193 137 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus microcercus
8058632 8058632 PRJNA384462_S_NODE_5407_length_232_cov_2.491803_g5291_i0 PRJNA384462 5407 232 2.491803 5.78098296 Strongyloides papillosus 174720 Nematoda Nematoda 243 1.1500000000000001e-59   NTclustered gi|687022644|emb|LM525558.1| 174720 g5291 i0 86.818 64.6336206896552 220 25 94 4 15 232 232637 232420 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000004 blastn 14995 243 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
10609129 10609129 PRJNA384462_S_NODE_3929_length_266_cov_2.714286_g3813_i0 PRJNA384462 3929 266 2.714286 7.22000076 Auanema freiburgensis 1963013 Nematoda Nematoda 52.8 0.024   NTclustered gi|1527173533|gb|MH124555.1| 1963013 g3813 i0 100 0.105263157894737 28 0 11 0 28 55 12755 12728 Auanema freiburgensis strain APS7 UNC-22 (unc-22) mRNA, partial cds blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema freiburgensis
20806914 20806914 PRJNA384462_S_NODE_15257_length_161_cov_1.357143_g15141_i0 PRJNA384462 15257 161 1.357143 2.18500023 Strongyloides papillosus 174720 Nematoda Nematoda 56.5 0.001   NTclustered gi|690018538|emb|LM525776.1| 174720 g15141 i0 82.54 0.565217391304348 63 11 39 0 99 161 56383 56445 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000163 blastn 91 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
22081800 22081800 PRJNA384462_S_NODE_978_length_521_cov_2.368644_g864_i0 PRJNA384462 978 521 2.368644 12.34063524 Trichinella spiralis 6334 Nematoda Nematoda 54.7 0.014   NTclustered gi|339237868|ref|XM_003380441.1| 6334 g864 i0 94.444 0.0690978886756238 36 0 7 2 175 209 1195 1161 Trichinella spiralis conserved hypothetical protein (Tsp_06171) mRNA, complete cds blastn 36 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
23357408 23357408 PRJNA384462_S_NODE_7279_length_207_cov_1.455696_g7163_i0 PRJNA384462 7279 207 1.455696 3.01329072 Caenorhabditis remanei 31234 Nematoda Nematoda 104 4.93e-18   NTclustered gi|2445365113|ref|XM_003113331.2| 31234 g7163 i0 79.221 27.8164251207729 154 29 73 3 45 196 597 445 Caenorhabditis remanei uncharacterized protein (GCK72_009749), partial mRNA blastn 5758 104 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;