RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA384462" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA384462 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
405313 405313 PRJNA384462_S_NODE_12841_length_167_cov_1.076271_g12725_i0 PRJNA384462 12841 167 1.076271 1.79737257 Haliotis rufescens 6454 Mollusca Mollusca 52.8 0.014   NTclustered gi|2245722334|ref|XM_046515319.2| 6454 g12725 i0 100 0.167664670658683 28 0 17 0 122 149 355 328 PREDICTED: Haliotis rufescens E3 ubiquitin-protein ligase PPP1R11-like (LOC124145535), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rufescens
405346 405346 PRJNA384462_S_NODE_4901_length_242_cov_1.922280_g4785_i0 PRJNA384462 4901 242 1.92228 4.6519176 Haliotis asinina 109174 Mollusca Mollusca 169 2.07e-37   NTclustered gi|2793357852|ref|XM_067794336.1| 109174 g4785 i0 81.463 23.8884297520661 205 38 85 0 5 209 403 199 PREDICTED: Haliotis asinina GTP-binding nuclear protein Ran (LOC137256497), mRNA blastn 5781 169 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis asinina
1680195 1680195 PRJNA384462_S_NODE_7922_length_200_cov_2.682119_g7806_i0 PRJNA384462 7922 200 2.682119 5.364238 Saccostrea echinata 191078 Mollusca Mollusca 52.8 0.017   NTclustered gi|2628510430|ref|XM_061331793.1| 191078 g7806 i0 94.286 0.175 35 1 17 1 38 71 2590 2556 PREDICTED: Saccostrea echinata uncharacterized LOC133195840 (LOC133195840), mRNA blastn 35 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea echinata
4903855 4903855 PRJNA384462_S_NODE_3364_length_285_cov_2.173729_g3248_i0 PRJNA384462 3364 285 2.173729 6.19512765 Metazoa 33208 Mollusca Mollusca 104 7.17e-18   NTclustered gi|2506323940|ref|XM_056100420.1| 6465 g3248 i0 86 5.91929824561404 100 11 34 3 187 284 905 807 PREDICTED: Patella vulgata calreticulin (LOC126817726), mRNA blastn 1687 104 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata
10609109 10609109 PRJNA384462_S_NODE_13549_length_165_cov_1.318966_g13433_i0 PRJNA384462 13549 165 1.318966 2.1762939 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.014   NTclustered gi|2913001816|dbj|AP039609.1| 145626 g13433 i0 100 0.16969696969697 28 0 17 0 131 158 34125338 34125311 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 28, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
11883979 11883979 PRJNA384462_S_NODE_11430_length_175_cov_0.936508_g11314_i0 PRJNA384462 11430 175 0.936508 1.638889 Biomphalaria glabrata 6526 Mollusca Mollusca 78.7 2.43e-10   NTclustered gi|2502105575|ref|XM_056043367.1| 6526 g11314 i0 92.593 0.874285714285714 54 4 31 0 1 54 1063 1116 PREDICTED: Biomphalaria glabrata procathepsin L-like (LOC106063347), transcript variant X2, mRNA blastn 153 78.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
11884004 11884004 PRJNA384462_S_NODE_3090_length_296_cov_1.287449_g2974_i0 PRJNA384462 3090 296 1.287449 3.81084904 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.027   NTclustered gi|2912997258|dbj|AP039602.1| 145626 g2974 i0 100 0.0945945945945946 28 0 9 0 102 129 57693612 57693585 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 21, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
15708063 15708063 PRJNA384462_S_NODE_14993_length_162_cov_0.902655_g14877_i0 PRJNA384462 14993 162 0.902655 1.4623011 Patella vulgata 6465 Mollusca Mollusca 52.8 0.013   NTclustered gi|2506311398|ref|XM_050534983.2| 6465 g14877 i0 94.286 0.216049382716049 35 1 21 1 8 41 1667 1701 PREDICTED: Patella vulgata ribosome biogenesis protein BMS1 homolog (LOC126810046), transcript variant X1, mRNA blastn 35 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata
23357388 23357388 PRJNA384462_S_NODE_4399_length_253_cov_2.284314_g4283_i0 PRJNA384462 4399 253 2.284314 5.77931442 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.006   NTclustered gi|2912993551|dbj|AP039598.1| 145626 g4283 i0 100 0.114624505928854 29 0 11 0 223 251 59755158 59755130 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 17, sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;