RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA384462" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA384462 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
405311 405311 PRJNA384462_S_NODE_12581_length_168_cov_1.285714_g12465_i0 PRJNA384462 12581 168 1.285714 2.15999952 Dictyostelium purpureum 5786 Evosea other_Eukaryota 244 2.1699999999999999e-60   NTclustered gi|330799499|ref|XM_003287734.1| 5786 g12465 i0 92.857 95.4821428571429 168 12 100 0 1 168 240 73 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_72359), partial mRNA blastn 16041 244 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
1680182 1680182 PRJNA384462_S_NODE_4262_length_257_cov_1.375000_g4146_i0 PRJNA384462 4262 257 1.375 3.53375 Dictyostelium discoideum 44689 Evosea other_Eukaryota 193 1.32e-44   NTclustered gi|66805758|ref|XM_631509.1| 352472 g4146 i0 81.172 8.44747081712062 239 45 93 0 7 245 322 560 Dictyostelium discoideum AX4 protein serine/threonine kinase (cdk5) mRNA, complete cds blastn 2171 193 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
7453859 7453859 PRJNA384462_S_NODE_6346_length_218_cov_1.159763_g6230_i0 PRJNA384462 6346 218 1.159763 2.52828334 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.005   NTclustered gi|330842687|ref|XM_003293257.1| 5786 g6230 i0 100 0.279816513761468 29 0 13 0 10 38 320 348 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_93025), mRNA blastn 61 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
11279061 11279061 PRJNA384462_S_NODE_4489_length_251_cov_1.737624_g4373_i0 PRJNA384462 4489 251 1.737624 4.36143624 Eumycetozoa 142796 Evosea other_Eukaryota 315 2.6299999999999998e-81   NTclustered gi|470266101|ref|XM_004361626.1| 261658 g4373 i0 89.243 99.2629482071713 251 27 100 0 1 251 510 260 Cavenderia fasciculata uncharacterized protein (DFA_05968), partial mRNA blastn 24915 315 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
16982715 16982715 PRJNA384462_S_NODE_5834_length_225_cov_1.886364_g5718_i0 PRJNA384462 5834 225 1.886364 4.244319 Acytostelium subglobosum 361139 Evosea other_Eukaryota 52.8 0.02   NTclustered gi|831756844|ref|XM_012893394.1| 1410327 g5718 i0 100 0.124444444444444 28 0 12 0 121 148 2734 2707 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
19531208 19531208 PRJNA384462_S_NODE_9276_length_189_cov_1.092857_g9160_i0 PRJNA384462 9276 189 1.092857 2.06549973 Dictyostelium purpureum 5786 Evosea other_Eukaryota 233 5.399999999999999e-57   NTclustered gi|330841829|ref|XM_003292845.1| 5786 g9160 i0 88.889 96.5555555555556 189 21 100 0 1 189 253 65 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_73394), mRNA blastn 18249 233 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
21477538 21477538 PRJNA384462_S_NODE_3997_length_264_cov_4.116279_g3881_i0 PRJNA384462 3997 264 4.116279 10.86697656 Dictyostelium 5782 Evosea other_Eukaryota 207 4.86e-49   NTclustered gi|2367630|gb|AF016242.1|AF016242 44689 g3881 i0 83.857 70.9962121212121 223 30 83 5 1 220 387 606 Dictyostelium discoideum protein synthesis elongation factor 1-alpha (tef2) gene, partial cds blastn 18743 207 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
23357399 23357399 PRJNA384462_S_NODE_599_length_636_cov_6.865417_g507_i0 PRJNA384462 599 636 6.865417 43.66405212 Dictyostelium discoideum 44689 Evosea other_Eukaryota 449 1.9199999999999995e-121   NTclustered gi|66805384|ref|XM_631333.1| 352472 g507 i0 79.499 94.0188679245283 639 125 100 6 1 636 398 1033 Dictyostelium discoideum AX4 hypothetical protein (act4) mRNA, complete cds blastn 59796 449 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;