RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA384462" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA384462 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19531146 19531146 PRJNA384462_S_NODE_11076_length_177_cov_1.093750_g10960_i0 PRJNA384462 11076 177 1.09375 1.9359375 Asterias rubens 7604 Echinodermata other_Eukaryota 58.4 3.21e-4   NTclustered gi|1834289145|ref|XM_033784639.1| 7604 g10960 i0 97.059 0.192090395480226 34 1 19 0 18 51 365 398 PREDICTED: Asterias rubens histone H1-gamma, late-like (LOC117300811), mRNA blastn 34 58.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
20806895 20806895 PRJNA384462_S_NODE_11777_length_173_cov_1.217742_g11661_i0 PRJNA384462 11777 173 1.217742 2.10669366 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 52.8 0.015   NTclustered gi|2038005700|ref|XM_041616104.1| 7654 g11661 i0 100 0.161849710982659 28 0 16 0 27 54 1384 1411 PREDICTED: Lytechinus variegatus formin-binding protein 4-like (LOC121421404), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;