RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA384462" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA384462 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13159028 13159028 PRJNA384462_S_NODE_11931_length_172_cov_1.235772_g11815_i0 PRJNA384462 11931 172 1.235772 2.12552784 Ripella decalvata 2047822 Discosea other_Eukaryota 241 2.87e-59   NTclustered gi|1269228433|gb|MF683558.1| 2047822 g11815 i0 91.86 88.1511627906977 172 14 100 0 1 172 937 766 Ripella decalvata clone 26.2.14 18S ribosomal RNA gene, partial sequence blastn 15162 241 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
16982701 16982701 PRJNA384462_S_NODE_394_length_745_cov_194.385057_g319_i0 PRJNA384462 394 745 194.385057 1448.16867465 Paramoeba perurans 437603 Discosea other_Eukaryota 272 5.26e-68   NTclustered gi|145386786|gb|EF216911.1| 437603 g319 i0 78.378 18.0872483221477 444 79 59 12 59 494 1 435 Neoparamoeba perurans strain GD-HAC/2/2 28S large subunit ribosomal RNA gene, partial sequence blastn 13475 272 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
23357396 23357396 PRJNA384462_S_NODE_5759_length_226_cov_2.802260_g5643_i0 PRJNA384462 5759 226 2.80226 6.3331076 Paravannella minima 1443144 Discosea other_Eukaryota 137 5.400000000000001e-28   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g5643 i0 79.512 55.0486725663717 205 33 88 9 22 221 3129 2929 Paravannella minima mitochondrion, complete genome blastn 12441 137 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;