RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA384462" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA384462 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
405354 405354 PRJNA384462_S_NODE_6221_length_220_cov_0.888889_g6105_i0 PRJNA384462 6221 220 0.888889 1.9555558 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 348 2.2200000000000005e-91   NTclustered gi|110277428|gb|DQ662856.1| 151077 g6105 i0 95.413 18.1954545454545 218 10 99 0 1 218 900 683 Chilodonella uncinata heat shock protein 90 gene, partial cds; macronuclear blastn 4003 348 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
6783004 6783004 PRJNA384462_S_NODE_13286_length_166_cov_0.871795_g13170_i0 PRJNA384462 13286 166 0.871795 1.4471797 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 291 2.7099999999999998e-74   NTclustered gi|110645063|gb|DQ665311.1| 151077 g13170 i0 98.193 40.4518072289157 166 3 100 0 1 166 707 872 Chilodonella uncinata clone 1 elongation factor 1-alpha (EF-1alpha) gene, partial cds; macronuclear blastn 6715 291 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
8728507 8728507 PRJNA384462_S_NODE_1507_length_424_cov_3.282667_g1391_i0 PRJNA384462 1507 424 3.282667 13.91850808 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 171 1.0799999999999998e-37   NTclustered gi|1763307|gb|U75429.1|ECU75429 5936 g1391 i0 84.706 39.5377358490566 170 26 40 0 232 401 760 591 Euplotes crassus macronuclear linear DNA, complete sequence, with histone H3 gene, complete cds blastn 16764 171 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus
10609097 10609097 PRJNA384462_S_NODE_11249_length_176_cov_1.165354_g11133_i0 PRJNA384462 11249 176 1.165354 2.05102304 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 213 6.44e-51   NTclustered gi|829194480|ref|XM_012800280.1| 312017 g11133 i0 88.953 0.977272727272727 172 19 98 0 1 172 534 363 Tetrahymena thermophila SB210 hypothetical protein partial mRNA blastn 172 213 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
10609154 10609154 PRJNA384462_S_NODE_9269_length_189_cov_1.092857_g9153_i0 PRJNA384462 9269 189 1.092857 2.06549973 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 195 2.55e-45   NTclustered gi|471230286|ref|XM_004036375.1| 5932 g9153 i0 85.263 80.978835978836 190 26 100 2 1 189 261 449 Ichthyophthirius multifiliis hypothetical protein (IMG5_083250) mRNA, complete cds blastn 15305 195 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
13159032 13159032 PRJNA384462_S_NODE_12431_length_169_cov_1.091667_g12315_i0 PRJNA384462 12431 169 1.091667 1.84491723 Polyplastron multivesiculatum 47894 SAR_Eukaryotes SAR_Eukaryotes 191 2.87e-44   NTclustered gi|92790169|emb|AJ965270.1| 47894 g12315 i0 86.982 130.366863905325 169 22 100 0 1 169 253 85 Polyplastron multivesiculatum partial mRNA for Polyubiqutin 1 (polyubiqutin 1 gene) blastn 22032 191 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Polyplastron Polyplastron multivesiculatum
21477539 21477539 PRJNA384462_S_NODE_4037_length_263_cov_2.962617_g3921_i0 PRJNA384462 4037 263 2.962617 7.79168271 Oxytrichidae 57506 SAR_Eukaryotes SAR_Eukaryotes 183 8.16e-42   NTclustered gi|331686220|gb|HQ432924.1| 94289 g3921 i0 80.4 34.6844106463878 250 41 94 7 2 247 875 630 Sterkiella histriomuscorum strain 310 heat shock protein 70 (hsp70) gene, complete cds; macronuclear blastn 9122 183 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
23357419 23357419 PRJNA384462_S_NODE_9419_length_188_cov_0.956835_g9303_i0 PRJNA384462 9419 188 0.956835 1.7988498 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 276 8.780000000000001e-70   NTclustered gi|300676719|gb|GQ377693.1| 151077 g9303 i0 93.085 1 188 13 100 0 1 188 437 624 Chilodonella uncinata gcr5-like mRNA, partial sequence blastn 188 276 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;