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contig_metadata

25 rows where analysis = "blastn", bioproject = "PRJNA384462" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 25 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA384462 · 25 ✖

analysis 1

  • blastn · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
405365 405365 PRJNA384462_S_NODE_8541_length_195_cov_1.047945_g8425_i0 PRJNA384462 8541 195 1.047945 2.04349275 Meleagris gallopavo 9103 Chordata Chordata 52.8 0.017   NTclustered gi|2721460874|emb|HG999691.4| 9103 g8425 i0 100 0.143589743589744 28 0 14 0 127 154 2730281 2730254 Meleagris gallopavo genome assembly, chromosome: 12 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
1075817 1075817 PRJNA384462_S_NODE_4581_length_249_cov_1.875000_g4465_i0 PRJNA384462 4581 249 1.875 4.66875 Metazoa 33208 Chordata Chordata 233 7.5e-57   NTclustered gi|51774948|dbj|AK174244.1| 7719 g4465 i0 83.6 253.582329317269 250 39 100 2 1 249 1073 825 Ciona intestinalis cDNA, clone:cicl008b08, full insert sequence blastn 63142 233 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
2956034 2956034 PRJNA384462_S_NODE_83_length_1231_cov_7.811337_g62_i0 PRJNA384462 83 1231 7.811337 96.15755847 Fringilla coelebs 37598 Chordata Chordata 60.2 7.51e-4   NTclustered gi|2917610922|emb|OZ228690.1| 37598 g62 i0 89.362 0.116165718927701 47 5 4 0 671 717 5296322 5296368 Fringilla coelebs genome assembly, chromosome: Z blastn 143 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Fringilla Fringilla coelebs
2956035 2956035 PRJNA384462_S_NODE_8403_length_196_cov_1.360544_g8287_i0 PRJNA384462 8403 196 1.360544 2.66666624 Varanus komodoensis 61221 Chordata Chordata 54.7 0.005   NTclustered gi|2118026107|ref|XM_044450485.1| 61221 g8287 i0 100 1.03571428571429 29 0 15 0 110 138 807 779 PREDICTED: Varanus komodoensis pseudopodium enriched atypical kinase 1 (PEAK1), transcript variant X2, mRNA blastn 203 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
4232413 4232413 PRJNA384462_S_NODE_10864_length_178_cov_1.472868_g10748_i0 PRJNA384462 10864 178 1.472868 2.62170504 Mauremys mutica 74926 Chordata Chordata 54.7 0.004   NTclustered gi|2129506779|ref|XM_045004865.1| 74926 g10748 i0 94.286 1.56741573033708 35 2 20 0 103 137 1668 1702 PREDICTED: Mauremys mutica dynein 2 intermediate chain 1 (DYNC2I1), transcript variant X2, mRNA blastn 279 54.7 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Geoemydidae Mauremys Mauremys mutica
5509005 5509005 PRJNA384462_S_NODE_13425_length_166_cov_0.863248_g13309_i0 PRJNA384462 13425 166 0.863248 1.43299168 Rattus norvegicus 10116 Chordata Chordata 63.9 6.42e-6   NTclustered gi|169118857|gb|AC129986.5| 10116 g13309 i0 91.489 1.92168674698795 47 2 28 2 96 142 126611 126567 Rattus norvegicus BAC CH230-317K1 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence blastn 319 63.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
5509046 5509046 PRJNA384462_S_NODE_6325_length_218_cov_2.112426_g6209_i0 PRJNA384462 6325 218 2.112426 4.60508868 Eublepharis macularius 481883 Chordata Chordata 106 1.46e-18   NTclustered gi|2476654345|ref|XM_054970604.1| 481883 g6209 i0 88.506 3.70642201834862 87 10 40 0 1 87 987 1073 PREDICTED: Eublepharis macularius protein phosphatase 1 catalytic subunit alpha (PPP1CA), mRNA blastn 808 106 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Eublepharidae Eublepharis Eublepharis macularius
9333394 9333394 PRJNA384462_S_NODE_15788_length_157_cov_4.148148_g15672_i0 PRJNA384462 15788 157 4.148148 6.51259236 Rana temporaria 8407 Chordata Chordata 58.4 2.78e-4   NTclustered gi|2017894458|ref|XM_040321476.1| 8407 g15672 i0 97.059 0.43312101910828 34 1 22 0 48 81 3022 2989 PREDICTED: Rana temporaria gastrula zinc finger protein XlCGF17.1-like (LOC120909749), transcript variant X2, mRNA blastn 68 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
10003958 10003958 PRJNA384462_S_NODE_12508_length_168_cov_2.571429_g12392_i0 PRJNA384462 12508 168 2.571429 4.32000072 Metazoa 33208 Chordata Chordata 52.8 0.014   NTclustered gi|27884987|gb|AC125128.3| 10090 g12392 i0 100 0.517857142857143 28 0 17 0 124 151 555 582 Mus musculus BAC clone RP24-289N17 from chromosome 14, complete sequence blastn 87 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
10609127 10609127 PRJNA384462_S_NODE_3869_length_268_cov_1.164384_g3753_i0 PRJNA384462 3869 268 1.164384 3.12054912 Mauremys reevesii 260615 Chordata Chordata 52.8 0.025   NTclustered gi|1985374593|ref|XM_039539809.1| 260615 g3753 i0 96.774 0.115671641791045 31 1 12 0 115 145 1349 1319 PREDICTED: Mauremys reevesii ankyrin repeat domain 37 (ANKRD37), mRNA blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Geoemydidae Mauremys Mauremys reevesii
11883999 11883999 PRJNA384462_S_NODE_2130_length_357_cov_5.016234_g2014_i0 PRJNA384462 2130 357 5.016234 17.90795538 Apteryx mantelli 2696672 Chordata Chordata 54.7 0.009   NTclustered gi|840016890|emb|LK066393.1| 202946 g2014 i0 100 0.0812324929971989 29 0 8 0 117 145 207577 207549 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold1803 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli
13159044 13159044 PRJNA384462_S_NODE_1551_length_419_cov_2.259459_g1435_i0 PRJNA384462 1551 419 2.259459 9.46713321 Phascolarctos cinereus 38626 Chordata Chordata 52.8 0.04   NTclustered gi|1190415044|ref|XM_021002057.1| 38626 g1435 i0 100 0.935560859188544 28 0 7 0 217 244 4572 4599 PREDICTED: Phascolarctos cinereus centrosome and spindle pole associated protein 1 (CSPP1), transcript variant X5, mRNA blastn 392 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Phascolarctidae Phascolarctos Phascolarctos cinereus
13159061 13159061 PRJNA384462_S_NODE_4091_length_262_cov_1.197183_g3975_i0 PRJNA384462 4091 262 1.197183 3.13661946 Cairina moschata 8855 Chordata Chordata 52.8 0.024   NTclustered gi|2921976312|gb|CP130421.1| 8855 g3975 i0 100 0.106870229007634 28 0 11 0 188 215 28827624 28827651 Cairina moschata breed yongchun chromosome 6 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
13159066 13159066 PRJNA384462_S_NODE_4991_length_240_cov_1.952880_g4875_i0 PRJNA384462 4991 240 1.95288 4.686912 Mus musculus 10090 Chordata Chordata 52.8 0.022   NTclustered gi|41351649|gb|AC102503.8| 10090 g4875 i0 100 0.116666666666667 28 0 12 0 60 87 112707 112734 Mus musculus chromosome 16, clone RP24-383M8, complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
14434041 14434041 PRJNA384462_S_NODE_15592_length_160_cov_3.576577_g15476_i0 PRJNA384462 15592 160 3.576577 5.7225232 Pristis pectinata 685728 Chordata Chordata 52.8 0.013   NTclustered gi|2328989249|ref|XM_052035015.1| 685728 g15476 i0 100 0.175 28 0 18 0 28 55 343 316 PREDICTED: Pristis pectinata bcl-2 homologous antagonist/killer-like (LOC127580981), transcript variant X2, mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rhinopristiformes Pristidae Pristis Pristis pectinata
14434046 14434046 PRJNA384462_S_NODE_3192_length_292_cov_1.160494_g3076_i0 PRJNA384462 3192 292 1.160494 3.38864248 Mus musculus 10090 Chordata Chordata 52.8 0.027   NTclustered gi|40363342|gb|AC135670.3| 10090 g3076 i0 100 0.287671232876712 28 0 10 0 62 89 153295 153322 Mus musculus BAC clone RP23-370D21 from chromosome 19, complete sequence blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
15708103 15708103 PRJNA384462_S_NODE_93_length_1183_cov_2.888007_g71_i0 PRJNA384462 93 1183 2.888007 34.16512281 Mus musculus 10090 Chordata Chordata 62.1 2e-4   NTclustered gi|57470702|gb|AC144813.3| 10090 g71 i0 100 0.0278951817413356 33 0 3 0 1102 1134 37267 37235 Mus musculus BAC clone RP24-324I23 from 9, complete sequence blastn 33 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
17653441 17653441 PRJNA384462_S_NODE_4794_length_244_cov_12.958974_g4678_i0 PRJNA384462 4794 244 12.958974 31.61989656 Metazoa 33208 Chordata Chordata 158 4.53e-34   NTclustered gi|1981790840|ref|XM_039406968.1| 7725 g4678 i0 91.304 51.8524590163934 115 10 47 0 129 243 1300 1186 PREDICTED: Styela clava actin, muscle-type (LOC120338943), mRNA blastn 12652 158 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
18256808 18256808 PRJNA384462_S_NODE_10895_length_178_cov_1.186047_g10779_i0 PRJNA384462 10895 178 1.186047 2.11116366 Crotalus tigris 88082 Chordata Chordata 67.6 5.38e-7   NTclustered gi|1974221071|ref|XM_039355287.1| 88082 g10779 i0 79.57 1.61797752808989 93 19 52 0 35 127 1309 1217 PREDICTED: Crotalus tigris 60S ribosomal protein L3-like (LOC120313388), mRNA blastn 288 67.6 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus tigris
18256849 18256849 PRJNA384462_S_NODE_3555_length_278_cov_1.113537_g3439_i0 PRJNA384462 3555 278 1.113537 3.09563286 Lampetra fluviatilis 7748 Chordata Chordata 161 4.08e-35   NTclustered gi|2805714469|emb|OZ078412.1| 7748 g3439 i0 78.652 198.41726618705 267 39 97 17 21 278 14793671 14793928 Lampetra fluviatilis genome assembly, chromosome: 9 blastn 55160 161 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
18256859 18256859 PRJNA384462_S_NODE_4995_length_240_cov_1.706806_g4879_i0 PRJNA384462 4995 240 1.706806 4.0963344 Mirounga angustirostris 9716 Chordata Chordata 52.8 0.022   NTclustered gi|2721827373|ref|XR_010411427.1| 9716 g4879 i0 100 0.116666666666667 28 0 12 0 27 54 8119 8092 PREDICTED: Mirounga angustirostris uncharacterized LOC135364406 (LOC135364406), ncRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Phocidae Mirounga Mirounga angustirostris
20806933 20806933 PRJNA384462_S_NODE_6817_length_212_cov_2.355828_g6701_i0 PRJNA384462 6817 212 2.355828 4.99435536 Lacerta agilis 80427 Chordata Chordata 52.8 0.019   NTclustered gi|1825686151|ref|XM_033165076.1| 80427 g6701 i0 100 0.132075471698113 28 0 13 0 82 109 1793 1820 PREDICTED: Lacerta agilis pre-mRNA processing factor 40 homolog A (PRPF40A), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Lacerta Lacerta agilis
22752730 22752730 PRJNA384462_S_NODE_7978_length_200_cov_1.231788_g7862_i0 PRJNA384462 7978 200 1.231788 2.463576 Metazoa 33208 Chordata Chordata 52.8 0.017   NTclustered gi|1621991783|ref|XM_028747829.1| 64176 g7862 i0 100 0.56 28 0 14 0 8 35 1630 1603 PREDICTED: Podarcis muralis collagen alpha-1(XXVIII) chain-like (LOC114606055), mRNA blastn 112 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Podarcis Podarcis muralis
24027592 24027592 PRJNA384462_S_NODE_2239_length_349_cov_1.680000_g2123_i0 PRJNA384462 2239 349 1.68 5.8632 Metazoa 33208 Chordata Chordata 58.4 7.08e-4   NTclustered gi|148231735|ref|NM_001086758.1| 8355 g2123 i0 100 8.49283667621776 31 0 9 0 98 128 1376 1346 Xenopus laevis calsequestrin 1 S homeolog (casq1.S), mRNA blastn 2964 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
24027599 24027599 PRJNA384462_S_NODE_3439_length_282_cov_1.261803_g3323_i0 PRJNA384462 3439 282 1.261803 3.55828446 Fringillidae 9133 Chordata Chordata 52.8 0.026   NTclustered gi|2586345973|ref|XM_059850089.1| 30427 g3323 i0 100 0.49645390070922 28 0 10 0 236 263 4206 4233 PREDICTED: Haemorhous mexicanus centrosomal protein 128 (CEP128), transcript variant X2, mRNA blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Haemorhous Haemorhous mexicanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;