RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA384462" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA384462 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4232479 4232479 PRJNA384462_S_NODE_8844_length_192_cov_2.013986_g8728_i0 PRJNA384462 8844 192 2.013986 3.86685312 Leptotrichia hofstadii 157688 Bacteria Bacteria 344 2.44e-90   NTclustered gi|1708566027|dbj|AP019823.1| 157688 g8728 i0 98.958 155.713541666667 192 2 100 0 1 192 576472 576281 Leptotrichia hofstadii JCM16775 DNA, complete genome blastn 29897 344 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii
4903845 4903845 PRJNA384462_S_NODE_15404_length_161_cov_0.910714_g15288_i0 PRJNA384462 15404 161 0.910714 1.46624954 Fusobacterium 848 Bacteria Bacteria 292 7.24e-75   NTclustered gi|2705020071|gb|CP084132.1| 851 g15288 i0 99.379 485.689440993789 161 1 100 0 1 161 107384 107544 Fusobacterium nucleatum strain KCOM3713 chromosome, complete genome blastn 78196 292 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
14434042 14434042 PRJNA384462_S_NODE_15912_length_156_cov_2.308411_g15796_i0 PRJNA384462 15912 156 2.308411 3.60112116 Leptotrichia hofstadii 157688 Bacteria Bacteria 283 4.1899999999999994e-72   NTclustered gi|1708566027|dbj|AP019823.1| 157688 g15796 i0 99.359 170.544871794872 156 1 100 0 1 156 497955 497800 Leptotrichia hofstadii JCM16775 DNA, complete genome blastn 26605 283 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii
16982716 16982716 PRJNA384462_S_NODE_6014_length_222_cov_2.942197_g5898_i0 PRJNA384462 6014 222 2.942197 6.53167734 Leptotrichia sp. SK-5 3075818 Bacteria Bacteria 52.8 0.02   NTclustered gi|2899356158|dbj|AP028931.1| 3075818 g5898 i0 94.118 0.153153153153153 34 2 15 0 128 161 1247371 1247404 Leptotrichia sp. SK-5 DNA, complete genome blastn 34 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. SK-5
20201964 20201964 PRJNA384462_S_NODE_10476_length_180_cov_2.343511_g10360_i0 PRJNA384462 10476 180 2.343511 4.2183198 Leptotrichia 32067 Bacteria Bacteria 333 4.87e-87   NTclustered gi|2557559843|gb|CP130323.1| 3058373 g10360 i0 100 489.222222222222 180 0 100 0 1 180 197545 197366 Leptotrichia sp. HMT-225 chromosome, complete genome blastn 88060 333 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. HMT-225
21477559 21477559 PRJNA384462_S_NODE_9137_length_190_cov_1.347518_g9021_i0 PRJNA384462 9137 190 1.347518 2.5602842 Leptotrichia 32067 Bacteria Bacteria 351 1.4399999999999997e-92   NTclustered gi|1708566027|dbj|AP019823.1| 157688 g9021 i0 100 431.173684210526 190 0 100 0 1 190 2256493 2256304 Leptotrichia hofstadii JCM16775 DNA, complete genome blastn 81923 351 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii
22752681 22752681 PRJNA384462_S_NODE_11338_length_175_cov_1.928571_g11222_i0 PRJNA384462 11338 175 1.928571 3.37499925 Fusobacterium 848 Bacteria Bacteria 318 1.32e-82   NTclustered gi|2705020071|gb|CP084132.1| 851 g11222 i0 99.429 482.811428571429 175 1 100 0 1 175 107765 107939 Fusobacterium nucleatum strain KCOM3713 chromosome, complete genome blastn 84492 318 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;