RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA384462" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA384462 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15103643 15103643 PRJNA384462_S_NODE_12492_length_168_cov_3.411765_g12376_i0 PRJNA384462 12492 168 3.411765 5.7317652 Eukaryota 2759 Plants Plants 311 2.11e-80   NTclustered gi|1898545223|gb|MT951391.1| 3078 g12376 i0 100 100.011904761905 168 0 100 0 1 168 1575 1408 Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence blastn 16802 311 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
16982707 16982707 PRJNA384462_S_NODE_4874_length_243_cov_1.051546_g4758_i0 PRJNA384462 4874 243 1.051546 2.55525678 Auxenochlorella protothecoides 3075 Plants Plants 198 2.6599999999999998e-46   NTclustered gi|760443118|ref|XM_011400326.1| 3075 g4758 i0 82.609 9.8559670781893 230 34 93 6 16 242 1 227 Auxenochlorella protothecoides 40S ribosomal protein S17 partial mRNA blastn 2395 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
21477495 21477495 PRJNA384462_S_NODE_10657_length_179_cov_1.884615_g10541_i0 PRJNA384462 10657 179 1.884615 3.37346085 Eukaryota 2759 Plants Plants 326 8.09e-85   NTclustered gi|1201359270|gb|MF040792.1| 3078 g10541 i0 99.441 100 179 1 100 0 1 179 182 360 Auxenochlorella pyrenoidosa isolate HIT9 18S ribosomal RNA gene, partial sequence blastn 17900 326 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;