RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA384462" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA384462 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2956002 2956002 PRJNA384462_S_NODE_14603_length_163_cov_0.894737_g14487_i0 PRJNA384462 14603 163 0.894737 1.45842131 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 204 3.54e-48   NTclustered gi|2874254106|emb|OY970189.1| 100233 g14487 i0 92.857 180.822085889571 140 10 86 0 4 143 5936370 5936231 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 29474 204 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
5509004 5509004 PRJNA384462_S_NODE_13385_length_166_cov_0.871795_g13269_i0 PRJNA384462 13385 166 0.871795 1.4471797 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 279 5.86e-71   NTclustered gi|2874254040|emb|OY970364.1| 412056 g13269 i0 96.988 1 166 5 100 0 1 166 227977 227812 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04463.bin.c.15 genome assembly, chromosome: 1 blastn 166 279 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
8728511 8728511 PRJNA384462_S_NODE_15427_length_161_cov_0.910714_g15311_i0 PRJNA384462 15427 161 0.910714 1.46624954 Fontisphaera 3050007 Bacteria Bacteria 254 3.42e-63   NTclustered gi|2874253779|emb|OY969763.1| 412056 g15311 i0 95.031 121.633540372671 161 8 100 0 1 161 3832570 3832410 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 blastn 19583 255 0.996078431372549 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
23357373 23357373 PRJNA384462_S_NODE_16199_length_152_cov_3.893204_g16083_i0 PRJNA384462 16199 152 3.893204 5.91767008 Schlesneria sphaerica 3373610 Bacteria Bacteria 182 1.52e-41   NTclustered gi|2844279856|gb|CP172346.1| 3373610 g16083 i0 91.603 17.7039473684211 131 11 86 0 2 132 369172 369042 Schlesneria sp. T3-172 chromosome, complete genome blastn 2691 182 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Schlesneria Schlesneria sphaerica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;