RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA383995" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA383995 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4903808 4903808 PRJNA383995_P_NODE_8624_length_220_cov_2.385965_g8525_i0 PRJNA383995 8624 220 2.385965 5.249123 Deinococcus 1298 Bacteria Bacteria 407 3.61e-109   NTclustered gi|2154377219|gb|OL604406.1| 47478 g8525 i0 100 103.95 220 0 100 0 1 220 11 230 Deinococcus sp. strain AS-438 16S ribosomal RNA gene, partial sequence blastn 22869 407 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
8058588 8058588 PRJNA383995_P_NODE_847_length_616_cov_3.204586_g755_i0 PRJNA383995 847 616 3.204586 19.74024976 Deinococcus actinosclerus 1768108 Bacteria Bacteria 1090 0   NTclustered gi|972944657|gb|CP013910.1| 1768108 g755 i0 98.701 185.230519480519 616 5 100 3 1 616 74993 74381 Deinococcus actinosclerus strain BM2 chromosome, complete genome blastn 114102 1090 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus
12554424 12554424 PRJNA383995_P_NODE_12410_length_186_cov_2.978102_g12311_i0 PRJNA383995 12410 186 2.978102 5.53926972 Deinococcus 1298 Bacteria Bacteria 344 2.34e-90   NTclustered gi|821341785|gb|CP011389.1| 1309411 g12311 i0 100 266.112903225806 186 0 100 0 1 186 1886178 1885993 'Deinococcus soli' Cha et al. 2014 strain N5, complete genome blastn 49497 344 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;