RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA383995" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA383995 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5508956 5508956 PRJNA383995_P_NODE_15385_length_167_cov_0.864407_g15286_i0 PRJNA383995 15385 167 0.864407 1.44355969 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 189 1.0199999999999999e-43   NTclustered gi|820695469|tpe|LN714488.1| 572307 g15286 i0 88.125 18.2275449101796 160 17 100 2 1 158 301437 301596 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 3044 189 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
15708014 15708014 PRJNA383995_P_NODE_2213_length_405_cov_2.070225_g2114_i0 PRJNA383995 2213 405 2.070225 8.38441125 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.011   NTclustered gi|170285697|emb|CU672270.3| 123356 g2114 i0 100 0.0716049382716049 29 0 7 0 374 402 1789 1761 H.parasitica DNA sequence from clone HpEmoy2-20J10, complete sequence blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
24027525 24027525 PRJNA383995_P_NODE_11019_length_197_cov_3.905405_g10920_i0 PRJNA383995 11019 197 3.905405 7.69364785 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 364 1.929999999999999e-96   NTclustered gi|291495599|gb|GU823226.1| 152704 g10920 i0 100 100 197 0 100 0 1 197 859 1055 Uncultured stramenopile clone BCA5F13RJ3F09 18S ribosomal RNA gene, partial sequence blastn 19700 364 1 Eukaryota Sar             uncultured stramenopile

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;