RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA382558" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA382558 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1679753 1679753 PRJNA382558_S_NODE_42_length_677_cov_23.567187_g40_i0 PRJNA382558 42 677 23.567187 159.54985599 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 477 9.4e-130   NTclustered gi|2874253755|emb|OY969695.1| 412054 g40 i0 81.507 155.308714918759 584 105 86 3 88 668 254556 253973 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 105144 477 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
6782721 6782721 PRJNA382558_S_NODE_8606_length_181_cov_4.138889_g8602_i0 PRJNA382558 8606 181 4.138889 7.49138909 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 130 6.9e-26   NTclustered gi|2874253728|emb|OY969570.1| 412054 g8602 i0 79.781 42.7569060773481 183 33 100 3 1 181 4682150 4681970 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 7739 130 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
8058219 8058219 PRJNA382558_S_NODE_4307_length_220_cov_8.524590_g4303_i0 PRJNA382558 4307 220 8.52459 18.754098 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 152 1.87e-32   NTclustered gi|2874254107|emb|OY970192.1| 412054 g4303 i0 83.636 26.8454545454545 165 23 74 4 54 216 2756251 2756089 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 5906 152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
18256556 18256556 PRJNA382558_S_NODE_9695_length_174_cov_7.547445_g9691_i0 PRJNA382558 9695 174 7.547445 13.1325543 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 161 2.33e-35   NTclustered gi|2874253755|emb|OY969695.1| 412054 g9691 i0 84.906 167.959770114943 159 24 91 0 13 171 218525 218683 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 29225 161 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
22081435 22081435 PRJNA382558_S_NODE_6338_length_197_cov_9.937500_g6334_i0 PRJNA382558 6338 197 9.9375 19.576875 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 219 1.59e-52   NTclustered gi|2874253755|emb|OY969695.1| 412054 g6334 i0 86.802 23.756345177665 197 24 99 2 1 196 131461 131266 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 4680 219 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;