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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA382558" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA382558 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3626439 3626439 PRJNA382558_S_NODE_2263_length_261_cov_6.508929_g2259_i0 PRJNA382558 2263 261 6.508929 16.98830469 Mus 10088 Chordata Chordata 477 3.3099999999999986e-130   NTclustered gi|846387786|dbj|LC061991.1| 10090 g2259 i0 99.617 100 261 1 100 0 1 261 1008 748 Mus musculus mitochondrion DNA, including ATP6, COX3, tRNA-Gly, ND3, tRNA-Arg, ND4L, ND4 genes, complete sequence, sequence_id: (8070..10988)_18 blastn 26100 477 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
4903658 4903658 PRJNA382558_S_NODE_11844_length_164_cov_6.291339_g11840_i0 PRJNA382558 11844 164 6.291339 10.31779596 Mus 10088 Chordata Chordata 303 3.42e-78   NTclustered gi|846387586|dbj|LC061956.1| 10090 g11840 i0 100 100 164 0 100 0 1 164 1 164 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_5 blastn 16400 303 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
6178694 6178694 PRJNA382558_S_NODE_2205_length_262_cov_10.280000_g2201_i0 PRJNA382558 2205 262 10.28 26.9336 Mus 10088 Chordata Chordata 484 1.99e-132   NTclustered gi|846387586|dbj|LC061956.1| 10090 g2201 i0 100 100 262 0 100 0 1 262 2347 2608 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_5 blastn 26200 484 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
10003841 10003841 PRJNA382558_S_NODE_5428_length_206_cov_16.390533_g5424_i0 PRJNA382558 5428 206 16.390533 33.76449798 Metazoa 33208 Chordata Chordata 381 2.0199999999999994e-101   NTclustered gi|846387586|dbj|LC061956.1| 10090 g5424 i0 100 100 206 0 100 0 1 206 1531 1736 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_5 blastn 20600 381 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
12554343 12554343 PRJNA382558_S_NODE_6530_length_196_cov_5.880503_g6526_i0 PRJNA382558 6530 196 5.880503 11.52578588 Lampetra 13103 Chordata Chordata 63.9 7.83e-6   NTclustered gi|2805736014|emb|OZ078436.1| 7748 g6526 i0 97.297 5.79591836734694 37 1 19 0 3 39 3422681 3422717 Lampetra fluviatilis genome assembly, chromosome: 33 blastn 1136 63.9 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
16378216 16378216 PRJNA382558_S_NODE_5833_length_202_cov_10.884848_g5829_i0 PRJNA382558 5833 202 10.884848 21.98739296 root 1 Root_unresolved Root_unresolved 278 2.67e-70   NTclustered gi|354799462|gb|JN963963.1| 10090 g5829 i0 98.113 78.8217821782178 159 3 79 0 44 202 20732 20890 Mus musculus targeted non-conditional, lacZ-tagged mutant allele Lrrc23:tm1e(EUCOMM)Wtsi; transgenic blastn 15922 279 0.996415770609319 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
18256346 18256346 PRJNA382558_S_NODE_13795_length_157_cov_3.550000_g13791_i0 PRJNA382558 13795 157 3.55 5.5735 Fringilla coelebs 37598 Chordata Chordata 52.8 0.013   NTclustered gi|2917610922|emb|OZ228690.1| 37598 g13791 i0 100 0.178343949044586 28 0 18 0 21 48 254440 254467 Fringilla coelebs genome assembly, chromosome: Z blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Fringilla Fringilla coelebs
21477356 21477356 PRJNA382558_S_NODE_1117_length_310_cov_10.725275_g1113_i0 PRJNA382558 1117 310 10.725275 33.2483525 Metazoa 33208 Chordata Chordata 54.7 0.008   NTclustered gi|2805738660|emb|OZ078456.1| 7748 g1113 i0 100 7.43548387096774 29 0 9 0 274 302 4206859 4206887 Lampetra fluviatilis genome assembly, chromosome: 53 blastn 2305 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
24027483 24027483 PRJNA382558_S_NODE_7099_length_191_cov_6.870130_g7095_i0 PRJNA382558 7099 191 6.87013 13.1219483 Mus 10088 Chordata Chordata 353 4.02e-93   NTclustered gi|756142290|gb|KP260515.1| 10090 g7095 i0 100 100 191 0 100 0 1 191 11360 11170 Mus musculus strain ME mitochondrion, complete genome blastn 19100 353 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
25301864 25301864 PRJNA382558_S_NODE_11600_length_165_cov_6.968750_g11596_i0 PRJNA382558 11600 165 6.96875 11.4984375 Mus 10088 Chordata Chordata 305 9.59e-79   NTclustered gi|846388176|dbj|LC062059.1| 10090 g11596 i0 100 100 165 0 100 0 1 165 401 237 Mus musculus mitochondrion DNA, including Cytb, tRNA-Tyr, tRNA-Pro, tRNA-Phe, 12S rRNA genes and D-loop, complete sequence, sequence_id: (14446..634)_12 blastn 16500 305 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;