RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA382357" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA382357 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9331640 9331640 PRJNA382357_P_NODE_27468_length_429_cov_1.480978_g26730_i0 PRJNA382357 27468 429 1.480978 6.35339562 Adineta vaga 104782 Rotifera other_Eukaryota 259 2.27e-64   NTclustered gi|189313924|gb|EU637018.1| 104782 g26730 i0 77.907 6.58508158508158 430 85 99 7 5 429 27683 28107 Adineta vaga 7 transmembrane receptor 2, 7 transmembrane receptor 4, myosin alkali light chain, sodefrin precursor repeats A, sodefrin precursor repeats C, metal binding protein, tRNA methyltransferase, laminin-G, tetratricopeptide repeat containing protein, hsp82, hypothetical proteins, zinc carboxypeptidase, hypothetical protein, and saicars genes, complete cds; and hypothetical protein gene, partial cds blastn 2825 259 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
10607876 10607876 PRJNA382357_P_NODE_58229_length_307_cov_1.317073_g57490_i0 PRJNA382357 58229 307 1.317073 4.04341411 Adineta vaga 104782 Rotifera other_Eukaryota 351 2.52e-92   NTclustered gi|259129963|gb|GQ398061.1| 104782 g57490 i0 98.5 76.5928338762215 200 2 97 1 11 210 6673 6871 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 23514 351 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;