RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA382357" and tax_phylum = "Promethearchaeota"

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tax_superkingdom 1

tax_phylum 1

  • Promethearchaeota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA382357 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6780536 6780536 PRJNA382357_P_NODE_135266_length_211_cov_0.866667_g134527_i0 PRJNA382357 135266 211 0.866667 1.82866737 Promethearchaeum syntrophicum 2594042 Archaea Archaea 54.7 0.005   NTclustered gi|2778339399|gb|CP042905.2| 2594042 g134527 i0 92.308 0.350710900473934 39 1 18 2 141 179 2990751 2990715 Promethearchaeum syntrophicum strain MK-D1 chromosome, complete genome blastn 74 54.7 1 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia Promethearchaeales Promethearchaeaceae Promethearchaeum Promethearchaeum syntrophicum
20803827 20803827 PRJNA382357_P_NODE_103617_length_238_cov_2.146893_g102878_i0 PRJNA382357 103617 238 2.146893 5.10960534 Promethearchaeum syntrophicum 2594042 Archaea Archaea 52.8 0.021   NTclustered gi|2778339399|gb|CP042905.2| 2594042 g102878 i0 100 0.117647058823529 28 0 12 0 79 106 1873658 1873685 Promethearchaeum syntrophicum strain MK-D1 chromosome, complete genome blastn 28 52.8 1 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia Promethearchaeales Promethearchaeaceae Promethearchaeum Promethearchaeum syntrophicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;