RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA382357" and tax_phylum = "Placozoa"

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tax_superkingdom 1

tax_phylum 1

  • Placozoa · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA382357 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19528332 19528332 PRJNA382357_P_NODE_11236_length_628_cov_1.675485_g10525_i0 PRJNA382357 11236 628 1.675485 10.5220458 Trichoplax adhaerens 10228 Placozoa other_Eukaryota 69.4 6.19e-7   NTclustered gi|196007811|ref|XM_002113736.1| 10228 g10525 i0 93.478 10.4076433121019 46 3 15 0 367 412 126 171 Trichoplax adhaerens replacement histone H3.3 (TRIADDRAFT_36142), partial mRNA blastn 6536 69.4 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens
24629753 24629753 PRJNA382357_P_NODE_20420_length_488_cov_2.377049_g19686_i0 PRJNA382357 20420 488 2.377049 11.59999912 Trichoplax adhaerens 10228 Placozoa other_Eukaryota 311 7.11e-80   NTclustered gi|196007811|ref|XM_002113736.1| 10228 g19686 i0 85.714 63.2909836065574 294 42 60 0 1 294 105 398 Trichoplax adhaerens replacement histone H3.3 (TRIADDRAFT_36142), partial mRNA blastn 30886 311 1 Eukaryota Opisthokonta Metazoa Placozoa Uniplacotomia Trichoplacea Trichoplacidae Trichoplax Trichoplax adhaerens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;