RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA382357" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA382357 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16980203 16980203 PRJNA382357_P_NODE_136994_length_210_cov_0.872483_g136255_i0 PRJNA382357 136994 210 0.872483 1.8322143 Methanobacterium formicicum 2162 Archaea Archaea 226 1.0299999999999999e-54   NTclustered gi|683509033|emb|LN515531.1| 2162 g136255 i0 99.206 15.4380952380952 126 0 95 1 85 210 2240213 2240337 Methanobacterium formicicum genome assembly, chromosome: chrI blastn 3242 226 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
18255946 18255946 PRJNA382357_P_NODE_79495_length_267_cov_10.621359_g78756_i0 PRJNA382357 79495 267 10.621359 28.35902853 Haloglomus litoreum 3034026 Archaea Archaea 62.1 4.06e-5   NTclustered gi|2463606059|gb|CP119988.1| 3034026 g78756 i0 97.222 3.48689138576779 36 1 13 0 123 158 443551 443516 Haloglomus litoreum strain DT116 chromosome, complete genome blastn 931 62.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Haloglomus Haloglomus litoreum
20806279 20806279 PRJNA382357_P_NODE_96437_length_246_cov_1.405405_g95698_i0 PRJNA382357 96437 246 1.405405 3.4572963 Methanobrevibacter arboriphilus 39441 Archaea Archaea 52.8 0.022   NTclustered gi|2047640843|dbj|AP019779.1| 39441 g95698 i0 100 0.113821138211382 28 0 11 0 182 209 1802090 1802117 Methanobrevibacter arboriphilus SA DNA, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter arboriphilus
23355588 23355588 PRJNA382357_P_NODE_24419_length_452_cov_1.033248_g23682_i0 PRJNA382357 24419 452 1.033248 4.67028096 Methanocaldococcus fervens 83171 Archaea Archaea 60.2 2.62e-4   NTclustered gi|256793173|gb|CP001696.1| 573064 g23682 i0 100 0.199115044247788 32 0 7 0 52 83 1395063 1395032 Methanocaldococcus fervens AG86, complete genome blastn 90 60.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus fervens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;