RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA382357" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA382357 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10002838 10002838 PRJNA382357_P_NODE_151428_length_204_cov_0.909091_g150689_i0 PRJNA382357 151428 204 0.909091 1.85454564 Leishmania 5658 Euglenozoa other_Eukaryota 54.7 0.005   NTclustered gi|1751371445|tpg|BK010876.1| 5670 g150689 i0 100 1.26470588235294 29 0 14 0 39 67 5131 5159 TPA_asm: Leishmania guyanensis strain MCAN kinetoplast, complete sequence blastn 258 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania guyanensis
11882528 11882528 PRJNA382357_P_NODE_44510_length_346_cov_1.291228_g43771_i0 PRJNA382357 44510 346 1.291228 4.46764888 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 54.7 0.009   NTclustered gi|1031970226|gb|CP015660.1| 85057 g43771 i0 100 0.0838150289017341 29 0 8 0 185 213 966345 966373 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI10, partial sequence blastn 29 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
16979708 16979708 PRJNA382357_P_NODE_105254_length_236_cov_23.531429_g104515_i0 PRJNA382357 105254 236 23.531429 55.53417244 Procryptobia sorokini 351715 Euglenozoa other_Eukaryota 246 9.05e-61   NTclustered gi|197723538|gb|EF681923.2| 351715 g104515 i0 96.026 149.970338983051 151 6 100 0 86 236 424 274 Procryptobia sorokini strain HFCC98 28S ribosomal RNA gene, partial sequence blastn 35393 246 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Parabodonida   Procryptobia Procryptobia sorokini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;