RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA382357" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA382357 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8056328 8056328 PRJNA382357_P_NODE_157847_length_199_cov_4.079710_g157108_i0 PRJNA382357 157847 199 4.07971 8.1186229 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 274 3.3899999999999997e-69   NTclustered gi|2651357788|gb|PP174303.1| 41631 g157108 i0 94.857 47.3266331658291 175 9 88 0 1 175 3378 3552 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9418 274 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
10607542 10607542 PRJNA382357_P_NODE_38649_length_368_cov_1.752443_g37910_i0 PRJNA382357 38649 368 1.752443 6.44899024 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 490 6.25e-134   NTclustered gi|2651357788|gb|PP174303.1| 41631 g37910 i0 92.92 55.6576086956522 339 20 98 4 1 337 4028 3692 Colpoda sp. isolate CIL1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20482 490 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
15706597 15706597 PRJNA382357_P_NODE_45993_length_341_cov_1.553571_g45254_i0 PRJNA382357 45993 341 1.553571 5.29767711 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.032   NTclustered gi|829198867|ref|XM_012800951.1| 312017 g45254 i0 100 0.0821114369501466 28 0 8 0 204 231 338 365 Tetrahymena thermophila SB210 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
22752460 22752460 PRJNA382357_P_NODE_9238_length_680_cov_4.907916_g8545_i0 PRJNA382357 9238 680 4.907916 33.3738288 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 451 5.720000000000001e-122   NTclustered gi|1802599794|gb|MT001203.1| 41631 g8545 i0 98.814 94.3117647058824 253 3 95 0 22 274 1311 1563 Colpoda sp. strain HFCC848 small subunit ribosomal RNA gene, partial sequence blastn 64132 451 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
23354453 23354453 PRJNA382357_P_NODE_106999_length_235_cov_1.281609_g106260_i0 PRJNA382357 106999 235 1.281609 3.01178115 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 80.5 9.66e-11   NTclustered gi|2386233158|ref|XM_001434382.2| 5888 g106260 i0 85.714 0.65531914893617 77 9 33 2 123 199 113 39 Paramecium tetraurelia uncharacterized protein (GSPATT00036153001), mRNA blastn 154 80.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;