RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA382357" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA382357 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6781557 6781557 PRJNA382357_P_NODE_45666_length_342_cov_1.462633_g44927_i0 PRJNA382357 45666 342 1.462633 5.00220486 Monoblepharis insignis 109953 Fungi Fungi 632 9.079999999999999e-177   NTclustered gi|19386988|gb|AF450112.1| 109953 g44927 i0 100 93.3538011695906 342 0 100 0 1 342 350 691 Monoblepharis insignis translation elongation factor 1-alpha gene, partial cds blastn 31927 632 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Monoblepharidaceae Monoblepharis Monoblepharis insignis
20805473 20805473 PRJNA382357_P_NODE_48597_length_332_cov_23499.121771_g47858_i0 PRJNA382357 48597 332 23499.121771 78017.08427972 uncultured Chytridiomycota 175247 Fungi Fungi 191 6.35e-44   NTclustered gi|541905186|gb|KC561973.1| 175247 g47858 i0 99.065 62.8192771084337 107 0 64 1 1 107 1514 1619 Uncultured Chytridiomycota isolate T31b_03 18S ribosomal RNA gene, partial sequence blastn 20856 191 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;