RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA382357" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA382357 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3625390 3625390 PRJNA382357_P_NODE_142623_length_207_cov_5.356164_g141884_i0 PRJNA382357 142623 207 5.356164 11.08725948 Candidatus Protochlamydia 282132 Bacteria Bacteria 248 2.15e-61   NTclustered gi|1691252667|emb|BX908798.2| 264201 g141884 i0 97.902 120.840579710145 143 3 100 0 1 143 1250373 1250515 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 25014 248 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
3626347 3626347 PRJNA382357_P_NODE_94243_length_248_cov_8.481283_g93504_i0 PRJNA382357 94243 248 8.481283 21.03358184 Candidatus Protochlamydia 282132 Bacteria Bacteria 257 4.43e-64   NTclustered gi|1691252667|emb|BX908798.2| 264201 g93504 i0 98.621 109.713709677419 145 2 93 0 104 248 1250517 1250373 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 27209 257 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
22079166 22079166 PRJNA382357_P_NODE_123218_length_220_cov_2.050314_g122479_i0 PRJNA382357 123218 220 2.050314 4.5106908 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 200 6.57e-47   NTclustered gi|2874253811|emb|OY969795.1| 464461 g122479 i0 84.577 0.913636363636364 201 31 91 0 20 220 653756 653956 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 201 200 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;