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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA380660" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA380660 · 14 ✖

analysis 1

  • blastn · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
402275 402275 PRJNA380660_P_NODE_6761_length_285_cov_2.640625_g6361_i0 PRJNA380660 6761 285 2.640625 7.52578125 Erythrolamprus reginae 121349 Chordata Chordata 75 5.62e-9   NTclustered gi|2876190807|ref|XM_070733000.1| 121349 g6361 i0 89.655 0.684210526315789 58 6 20 0 105 162 348 291 PREDICTED: Erythrolamprus reginae protein disulfide isomerase family A member 6 (PDIA6), mRNA blastn 195 75 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Dipsadidae Erythrolamprus Erythrolamprus reginae
402282 402282 PRJNA380660_P_NODE_8621_length_233_cov_2.205882_g8221_i0 PRJNA380660 8621 233 2.205882 5.13970506 Serinus canaria 9135 Chordata Chordata 62.1 3.46e-5   NTclustered gi|2312754485|ref|XM_009093859.4| 9135 g8221 i0 100 1.89270386266094 33 0 14 0 190 222 232 200 PREDICTED: Serinus canaria protein disulfide isomerase family A member 4 (PDIA4), mRNA blastn 441 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Serinus Serinus canaria
2952896 2952896 PRJNA380660_P_NODE_3803_length_419_cov_2.169231_g3412_i0 PRJNA380660 3803 419 2.169231 9.08907789 Styela clava 7725 Chordata Chordata 73.1 3.1e-8   NTclustered gi|1981807334|ref|XM_039415743.1| 7725 g3412 i0 97.619 2.96897374701671 42 1 10 0 342 383 385 426 PREDICTED: Styela clava elongation factor-like GTPase 1 (LOC120346092), mRNA blastn 1244 73.1 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
5505901 5505901 PRJNA380660_P_NODE_12885_length_151_cov_2.065574_g12485_i0 PRJNA380660 12885 151 2.065574 3.11901674 Mus musculus 10090 Chordata Chordata 274 2.42e-69   NTclustered gi|1907197542|ref|XM_011242739.3| 10090 g12485 i0 99.338 12.0132450331126 151 1 100 0 1 151 3422 3272 PREDICTED: Mus musculus ariadne RBR E3 ubiquitin protein ligase 1 (Arih1), transcript variant X2, mRNA blastn 1814 274 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
6177157 6177157 PRJNA380660_P_NODE_11145_length_187_cov_1.278481_g10745_i0 PRJNA380660 11145 187 1.278481 2.39075947 Corvus 30420 Chordata Chordata 56.5 0.001   NTclustered gi|2240515910|ref|XM_048300726.1| 134902 g10745 i0 96.97 0.352941176470588 33 1 18 0 2 34 1435 1467 PREDICTED: Corvus hawaiiensis uncharacterized LOC125324627 (LOC125324627), mRNA blastn 66 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Corvidae Corvus Corvus hawaiiensis
6177182 6177182 PRJNA380660_P_NODE_9485_length_216_cov_2.459893_g9085_i0 PRJNA380660 9485 216 2.459893 5.31336888 Metazoa 33208 Chordata Chordata 52.8 0.019   NTclustered gi|2853569888|ref|XM_069898128.1| 1343680 g9085 i0 100 0.259259259259259 28 0 13 0 47 74 3376 3349 PREDICTED: Narcine bancroftii RNA binding motif protein 27 (rbm27), transcript variant X3, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Torpediniformes Narcinidae Narcine Narcine bancroftii
8055515 8055515 PRJNA380660_P_NODE_5647_length_326_cov_2.545455_g5248_i0 PRJNA380660 5647 326 2.545455 8.2981833 Mus musculus 10090 Chordata Chordata 549 8.909999999999997e-152   NTclustered gi|74178163|dbj|AK150806.1| 10090 g5248 i0 100 89.9079754601227 297 0 91 0 26 322 112 408 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830015J16 product:mitochondrial ribosomal protein L52, full insert sequence blastn 29310 549 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
9330311 9330311 PRJNA380660_P_NODE_11948_length_170_cov_1.716312_g11548_i0 PRJNA380660 11948 170 1.716312 2.9177304 Trichosurus vulpecula 9337 Chordata Chordata 54.7 0.004   NTclustered gi|1919058789|ref|XM_036736415.1| 9337 g11548 i0 100 1.84117647058824 29 0 17 0 126 154 971 999 PREDICTED: Trichosurus vulpecula perilipin 1 (PLIN1), mRNA blastn 313 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Phalangeridae Trichosurus Trichosurus vulpecula
9330326 9330326 PRJNA380660_P_NODE_4448_length_383_cov_1.646893_g4051_i0 PRJNA380660 4448 383 1.646893 6.30760019 Ovis canadensis 37174 Chordata Chordata 54.7 0.01   NTclustered gi|2841411603|ref|XR_011258666.1| 37174 g4051 i0 100 0.368146214099217 29 0 8 0 48 76 3655 3683 PREDICTED: Ovis canadensis large tumor suppressor kinase 1 (LATS1), transcript variant X2, misc_RNA blastn 141 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis canadensis
9330334 9330334 PRJNA380660_P_NODE_6948_length_279_cov_2.008000_g6548_i0 PRJNA380660 6948 279 2.008 5.60232 Mus musculus 10090 Chordata Chordata 496 9.88e-136   NTclustered gi|42517182|gb|AC113540.12| 10090 g6548 i0 100 0.960573476702509 268 0 96 0 1 268 182281 182014 Mus musculus chromosome 17, clone RP23-158F13, complete sequence blastn 268 496 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
14431000 14431000 PRJNA380660_P_NODE_8072_length_246_cov_2.161290_g7672_i0 PRJNA380660 8072 246 2.16129 5.3167734 Mus musculus 10090 Chordata Chordata 455 1.4500000000000002e-123   NTclustered gi|52694076|gb|AC120870.8| 10090 g7672 i0 100 1 246 0 100 0 1 246 176935 177180 Mus musculus chromosome 1, clone RP23-15D1, complete sequence blastn 246 455 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
18253876 18253876 PRJNA380660_P_NODE_12955_length_150_cov_1.760331_g12555_i0 PRJNA380660 12955 150 1.760331 2.6404965 Mus musculus 10090 Chordata Chordata 278 1.85e-70   NTclustered gi|58531605|gb|AC132226.3| 10090 g12555 i0 100 114.32 150 0 100 0 1 150 45737 45588 Mus musculus BAC clone RP24-571A14 from 1, complete sequence blastn 17148 278 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
20803738 20803738 PRJNA380660_P_NODE_7577_length_260_cov_2.316017_g7177_i0 PRJNA380660 7577 260 2.316017 6.0216442 Mus musculus 10090 Chordata Chordata 470 5.519999999999998e-128   NTclustered gi|84039715|gb|AC154560.3| 10090 g7177 i0 99.231 1 260 2 100 0 1 260 158067 157808 Mus musculus BAC clone RP23-400E20 from chromosome 17, complete sequence blastn 260 470 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
20803740 20803740 PRJNA380660_P_NODE_7697_length_256_cov_2.903084_g7297_i0 PRJNA380660 7697 256 2.903084 7.43189504 Mus musculus 10090 Chordata Chordata 457 4.22e-124   NTclustered gi|49615286|gb|AC091309.13| 10090 g7297 i0 100 0.96484375 247 0 96 0 1 247 97268 97022 Mus musculus chromosome 17, clone RP23-127L4, complete sequence blastn 247 457 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;