RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA380660" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA380660 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1074287 1074287 PRJNA380660_P_NODE_6481_length_295_cov_2.157895_g6081_i0 PRJNA380660 6481 295 2.157895 6.36579025 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|2785761327|ref|XM_067215536.1| 5824 g6081 i0 100 0.203389830508475 30 0 10 0 158 187 2885 2856 Plasmodium brasilianum uncharacterized protein (MKS88_002518), partial mRNA blastn 60 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
2349549 2349549 PRJNA380660_P_NODE_1202_length_792_cov_1.930537_g929_i0 PRJNA380660 1202 792 1.930537 15.28985304 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.2 4.75e-4   NTclustered gi|1270523297|ref|XM_721334.2| 5861 g929 i0 97.143 0.218434343434343 35 1 5 0 30 64 1160 1126 Plasmodium yoelii RNA 3'-terminal phosphate cyclase protein (PY17X_1338900), partial mRNA blastn 173 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
6177164 6177164 PRJNA380660_P_NODE_1945_length_608_cov_2.227979_g1614_i0 PRJNA380660 1945 608 2.227979 13.54611232 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.2 3.6e-4   NTclustered gi|1270523297|ref|XM_721334.2| 5861 g1614 i0 97.143 0.231907894736842 35 1 6 0 545 579 1126 1160 Plasmodium yoelii RNA 3'-terminal phosphate cyclase protein (PY17X_1338900), partial mRNA blastn 141 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;