contig_metadata
5 rows where analysis = "blastn", bioproject = "PRJNA380660" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8055480 | 8055480 | PRJNA380660_P_NODE_10967_length_190_cov_2.136646_g10567_i0 | PRJNA380660 | 10967 | 190 | 2.136646 | 4.0596274 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 195 | 2.56e-45 | NTclustered | gi|2874253749|emb|OY969623.1| | 1914239 | g10567 | i0 | 85.714 | 186.689473684211 | 189 | 22 | 98 | 4 | 5 | 190 | 7051807 | 7051993 | MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 | blastn | 35471 | 195 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 10606012 | 10606012 | PRJNA380660_P_NODE_8889_length_227_cov_2.333333_g8489_i0 | PRJNA380660 | 8889 | 227 | 2.333333 | 5.29666591 | Maioricimonas rarisocia | 2528026 | Bacteria | Bacteria | 147 | 9.02e-31 | NTclustered | gi|1712603021|gb|CP036275.1| | 2528026 | g8489 | i0 | 82.456 | 14.7885462555066 | 171 | 26 | 74 | 4 | 60 | 227 | 1844151 | 1843982 | Maioricimonas rarisocia strain Mal4 chromosome, complete genome | blastn | 3357 | 147 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | Maioricimonas | Maioricimonas rarisocia | |
| 17651836 | 17651836 | PRJNA380660_P_NODE_3174_length_464_cov_2.103448_g2797_i0 | PRJNA380660 | 3174 | 464 | 2.103448 | 9.75999872 | Candidatus Protochlamydia | 282132 | Bacteria | Bacteria | 647 | 0 | NTclustered | gi|1691252667|emb|BX908798.2| | 264201 | g2797 | i0 | 91.398 | 119.403017241379 | 465 | 34 | 99 | 5 | 3 | 464 | 2153939 | 2154400 | Candidatus Protochlamydia amoebophila UWE25 complete genome | blastn | 55403 | 647 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia amoebophila | |
| 18253871 | 18253871 | PRJNA380660_P_NODE_11295_length_183_cov_2.038961_g10895_i0 | PRJNA380660 | 11295 | 183 | 2.038961 | 3.73129863 | planctomycete str. 658 | 149590 | Bacteria | Bacteria | 165 | 1.92e-36 | NTclustered | gi|12583971|gb|AF245375.1|AF245375 | 149590 | g10895 | i0 | 83.333 | 14.3114754098361 | 180 | 28 | 98 | 2 | 4 | 183 | 1305 | 1128 | Planctomycete str. 658 23S ribosomal RNA gene, partial sequence | blastn | 2619 | 165 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | planctomycete str. 658 | ||
| 20200339 | 20200339 | PRJNA380660_P_NODE_11876_length_171_cov_2.338028_g11476_i0 | PRJNA380660 | 11876 | 171 | 2.338028 | 3.99802788 | Gemmata | 113 | Bacteria | Bacteria | 265 | 1.69e-66 | NTclustered | gi|1727537522|gb|CP042911.1| | 114 | g11476 | i0 | 94.767 | 24.4853801169591 | 172 | 5 | 100 | 4 | 1 | 170 | 4798021 | 4798190 | Gemmata obscuriglobus strain DSM 5831 chromosome, complete genome | blastn | 4187 | 265 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Gemmata | Gemmata obscuriglobus |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;