RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA380660" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_clade 1

  • Haptista · 1 ✖

bioproject 1

  • PRJNA380660 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15102076 15102076 PRJNA380660_P_NODE_5232_length_342_cov_162.741214_g4834_i0 PRJNA380660 5232 342 162.741214 556.57495188 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 189 2.3599999999999993e-43   NTclustered gi|61187370|gb|AY752991.1| 299901 g4834 i0 94.355 39.6491228070175 124 6 48 1 85 208 1977 2099 Sphaerastrum fockii 28S ribosomal RNA gene, partial sequence blastn 13560 189 1 Eukaryota Haptista     Centroplasthelida Pterocystida Heterophryidae Sphaerastrum Sphaerastrum fockii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;