RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA380660" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA380660 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11880929 11880929 PRJNA380660_P_NODE_1330_length_744_cov_11.121678_g1044_i0 PRJNA380660 1330 744 11.121678 82.74528432 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 900 0   NTclustered gi|221185864|gb|FJ577811.1| 590481 g1044 i0 94.683 50.3252688172043 583 26 78 5 11 589 1 582 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 37442 900 1 Eukaryota Amoebozoa             uncultured Amoebozoa
22751046 22751046 PRJNA380660_P_NODE_3638_length_431_cov_2.910448_g3250_i0 PRJNA380660 3638 431 2.910448 12.54403088 Cochliopodium 313557 Discosea other_Eukaryota 747 0   NTclustered gi|659103837|gb|KJ569724.1| 1512279 g3250 i0 97.912 91.2343387470998 431 9 100 0 1 431 10 440 Cochliopodium sp. SG-2014 cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 39322 747 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium sp. SG-2014

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;