RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA380416" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA380416 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1676772 1676772 PRJNA380416_P_NODE_1942_length_437_cov_3.048969_g1795_i0 PRJNA380416 1942 437 3.048969 13.32399453 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 237 1.09e-57   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g1795 i0 78.771 18.1350114416476 358 72 81 4 75 430 482 127 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 7925 237 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
2952636 2952636 PRJNA380416_P_NODE_11723_length_166_cov_0.871795_g11576_i0 PRJNA380416 11723 166 0.871795 1.4471797 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 126 8.08e-25   NTclustered gi|669140207|ref|XM_008607450.1| 1156394 g11576 i0 81.132 0.957831325301205 159 28 95 2 2 159 1338 1181 Saprolegnia diclina VS20 inositol-3-phosphate synthase mRNA blastn 159 126 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
23354060 23354060 PRJNA380416_P_NODE_11539_length_166_cov_1.863248_g11392_i0 PRJNA380416 11539 166 1.863248 3.09299168 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 111 2.26e-20   NTclustered gi|673017229|ref|XM_008864354.1| 157072 g11392 i0 83.2 0.753012048192771 125 18 75 3 22 145 312 434 Aphanomyces invadans hypothetical protein mRNA blastn 125 111 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;