RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA380416" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA380416 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
402048 402048 PRJNA380416_P_NODE_13341_length_162_cov_0.902655_g13194_i0 PRJNA380416 13341 162 0.902655 1.4623011 Bradybaena similaris 145626 Mollusca Mollusca 58.4 2.9e-4   NTclustered gi|2912990805|dbj|AP039595.1| 145626 g13194 i0 97.059 0.209876543209877 34 1 21 0 27 60 10542472 10542505 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 14, sequence blastn 34 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
5505682 5505682 PRJNA380416_P_NODE_7945_length_203_cov_0.993506_g7798_i0 PRJNA380416 7945 203 0.993506 2.01681718 Lottia gigantea 225164 Mollusca Mollusca 193 9.99e-45   NTclustered gi|676493537|ref|XM_009068023.1| 225164 g7798 i0 89.032 74.1970443349754 155 17 76 0 2 156 205 51 Lottia gigantea hypothetical protein mRNA blastn 15062 193 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lottiidae Lottia Lottia gigantea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;