RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

25 rows where analysis = "blastn", bioproject = "PRJNA380416" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Sar · 25 ✖

bioproject 1

  • PRJNA380416 · 25 ✖

analysis 1

  • blastn · 25 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
402053 402053 PRJNA380416_P_NODE_361_length_1062_cov_3.169793_g280_i0 PRJNA380416 361 1062 3.169793 33.66320166 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 1720 0   NTclustered gi|53829555|gb|AY582830.1| 289359 g280 i0 98.463 35.9736346516008 976 15 92 0 87 1062 1238 263 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 ef1a gene, partial cds blastn 38204 1720 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
402056 402056 PRJNA380416_P_NODE_5561_length_246_cov_1.030457_g5414_i0 PRJNA380416 5561 246 1.030457 2.53492422 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 455 1.4500000000000002e-123   NTclustered gi|300521444|gb|GQ377690.1| 151077 g5414 i0 100 1 246 0 100 0 1 246 460 215 Chilodonella uncinata 14-3-3 protein-like mRNA, partial sequence blastn 246 455 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
1074160 1074160 PRJNA380416_P_NODE_1481_length_502_cov_7.960265_g1336_i0 PRJNA380416 1481 502 7.960265 39.9605303 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 917 0   NTclustered gi|1409222726|gb|MH536660.1| 88167 g1336 i0 99.602 98.9083665338645 503 1 100 1 1 502 1759 1257 Poterioochromonas malhamensis strain CMBB008 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 49652 917 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
1676772 1676772 PRJNA380416_P_NODE_1942_length_437_cov_3.048969_g1795_i0 PRJNA380416 1942 437 3.048969 13.32399453 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 237 1.09e-57   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g1795 i0 78.771 18.1350114416476 358 72 81 4 75 430 482 127 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 7925 237 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
1676784 1676784 PRJNA380416_P_NODE_8182_length_200_cov_1.006623_g8035_i0 PRJNA380416 8182 200 1.006623 2.013246 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 331 1.99e-86   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g8035 i0 96.5 30.565 200 7 100 0 1 200 367 566 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 6113 331 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
2952636 2952636 PRJNA380416_P_NODE_11723_length_166_cov_0.871795_g11576_i0 PRJNA380416 11723 166 0.871795 1.4471797 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 126 8.08e-25   NTclustered gi|669140207|ref|XM_008607450.1| 1156394 g11576 i0 81.132 0.957831325301205 159 28 95 2 2 159 1338 1181 Saprolegnia diclina VS20 inositol-3-phosphate synthase mRNA blastn 159 126 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
2952650 2952650 PRJNA380416_P_NODE_2903_length_354_cov_1.822951_g2756_i0 PRJNA380416 2903 354 1.822951 6.45324654 Poteriospumella lacustris 1117027 SAR_Eukaryotes SAR_Eukaryotes 372 2.26e-98   NTclustered gi|161015559|gb|EF577184.1| 1117027 g2756 i0 85.634 99.2372881355932 355 49 100 2 1 354 575 928 Spumella-like flagellate JBM10 beta-tubulin gene, partial cds blastn 35130 372 1 Eukaryota Sar     Chrysophyceae Chromulinales Dinobryaceae Poteriospumella Poteriospumella lacustris
2952653 2952653 PRJNA380416_P_NODE_5143_length_256_cov_1.724638_g4996_i0 PRJNA380416 5143 256 1.724638 4.41507328 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 460 3.2599999999999995e-125   NTclustered gi|859811083|gb|KM818001.1| 88167 g4996 i0 99.216 97.6015625 255 2 99 0 1 255 1966 2220 Poterioochromonas malhamensis strain SAG 933.1c 23S ribosomal RNA gene, partial sequence; plastid blastn 24986 460 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
2952654 2952654 PRJNA380416_P_NODE_6143_length_232_cov_2.087432_g5996_i0 PRJNA380416 6143 232 2.087432 4.84284224 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 235 1.92e-57   NTclustered gi|53829555|gb|AY582830.1| 289359 g5996 i0 93.631 67.7715517241379 157 10 68 0 2 158 169 13 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 ef1a gene, partial cds blastn 15723 235 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
4229184 4229184 PRJNA380416_P_NODE_13624_length_162_cov_0.902655_g13477_i0 PRJNA380416 13624 162 0.902655 1.4623011 Diplophrys mutabilis 1407010 SAR_Eukaryotes SAR_Eukaryotes 283 4.39e-72   NTclustered gi|550533550|dbj|AB856527.1| 1407010 g13477 i0 98.148 76.3950617283951 162 3 100 0 1 162 1730 1891 Diplophrys mutabilis gene for 18S ribosomal RNA, partial sequence blastn 12376 283 1 Eukaryota Sar     Bigyra Amphitremida   Diplophrys Diplophrys mutabilis
4229192 4229192 PRJNA380416_P_NODE_304_length_1132_cov_3.199446_g232_i0 PRJNA380416 304 1132 3.199446 36.21772872 Colpodella angusta 1541798 SAR_Eukaryotes SAR_Eukaryotes 139 8.6e-28   NTclustered gi|972268869|gb|KU159286.1| 1541798 g232 i0 79.612 10.5980565371025 206 33 18 7 830 1031 3964 3764 Colpodella angusta 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11997 139 1 Eukaryota Sar         Colpodellaceae Colpodella Colpodella angusta
6779761 6779761 PRJNA380416_P_NODE_9286_length_187_cov_1.471014_g9139_i0 PRJNA380416 9286 187 1.471014 2.75079618 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 346 6.56e-91   NTclustered gi|301014695|gb|GQ377692.1| 151077 g9139 i0 100 8.49197860962567 187 0 100 0 1 187 246 60 Chilodonella uncinata ribosomal protein S23a-like (rps23a) mRNA, complete sequence blastn 1588 346 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
8726835 8726835 PRJNA380416_P_NODE_8727_length_193_cov_1.263889_g8580_i0 PRJNA380416 8727 193 1.263889 2.43930577 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 351 1.46e-92   NTclustered gi|13194559|gb|AF300281.1|AF300281 151077 g8580 i0 99.482 100.233160621762 193 1 100 0 1 193 1341 1149 Chilodonella uncinata clone 1 18S small subunit ribosomal RNA gene, partial sequence blastn 19345 351 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
9330112 9330112 PRJNA380416_P_NODE_7808_length_205_cov_0.897436_g7661_i0 PRJNA380416 7808 205 0.897436 1.8397438 Pyrocystis lunula 2972 SAR_Eukaryotes SAR_Eukaryotes 267 5.87e-67   NTclustered gi|27450758|gb|AF508263.1| 2972 g7661 i0 91.282 94.380487804878 195 17 95 0 10 204 1142 948 Pyrocystis lunula actin mRNA, complete cds blastn 19348 267 1 Eukaryota Sar     Dinophyceae Gonyaulacales Pyrocystaceae Pyrocystis Pyrocystis lunula
10605758 10605758 PRJNA380416_P_NODE_10609_length_173_cov_1.645161_g10462_i0 PRJNA380416 10609 173 1.645161 2.84612853 Leukarachnion sp. ATCC PRA-24 568390 SAR_Eukaryotes SAR_Eukaryotes 143 8.38e-30   NTclustered gi|2727570083|gb|PP760457.1| 568390 g10462 i0 85.211 3.15606936416185 142 18 80 3 1 139 2300 2441 Leukarachnion sp. ATCC PRA-24 culture ATCC:BJ-24B2 mitochondrion, complete genome blastn 546 143 1 Eukaryota Sar             Leukarachnion sp. ATCC PRA-24
11277325 11277325 PRJNA380416_P_NODE_2649_length_370_cov_24.619938_g2502_i0 PRJNA380416 2649 370 24.619938 91.0937706 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 684 0   NTclustered gi|1409949881|gb|MH542675.1| 88167 g2502 i0 100 99.1189189189189 370 0 100 0 1 370 18 387 Poterioochromonas malhamensis strain SAG933-9 small subunit ribosomal RNA gene, partial sequence blastn 36674 684 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
11880736 11880736 PRJNA380416_P_NODE_13270_length_162_cov_1.761062_g13123_i0 PRJNA380416 13270 162 1.761062 2.85292044 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 300 4.36e-77   NTclustered gi|110644972|gb|DQ665918.1| 151077 g13123 i0 100 76.5061728395062 162 0 100 0 1 162 526 365 Chilodonella uncinata clone 1 beta-tubulin gene, partial cds blastn 12394 300 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
14430775 14430775 PRJNA380416_P_NODE_13292_length_162_cov_1.353982_g13145_i0 PRJNA380416 13292 162 1.353982 2.19345084 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 287 3.39e-73   NTclustered gi|859811083|gb|KM818001.1| 88167 g13145 i0 98.758 103.70987654321 161 2 99 0 1 161 429 589 Poterioochromonas malhamensis strain SAG 933.1c 23S ribosomal RNA gene, partial sequence; plastid blastn 16801 287 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
14430788 14430788 PRJNA380416_P_NODE_9492_length_185_cov_1.250000_g9345_i0 PRJNA380416 9492 185 1.25 2.3125 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 326 8.430000000000001e-85   NTclustered gi|347439279|gb|JN111988.1| 151077 g9345 i0 98.378 87.1405405405405 185 3 100 0 1 185 289 473 Chilodonella uncinata strain USA_WH clone P1 beta tubulin (btub) gene, partial cds; macronuclear blastn 16121 326 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
15704709 15704709 PRJNA380416_P_NODE_11173_length_167_cov_1.533898_g11026_i0 PRJNA380416 11173 167 1.533898 2.56160966 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 309 7.53e-80   NTclustered gi|301014695|gb|GQ377692.1| 151077 g11026 i0 100 1 167 0 100 0 1 167 430 264 Chilodonella uncinata ribosomal protein S23a-like (rps23a) mRNA, complete sequence blastn 167 309 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
15704735 15704735 PRJNA380416_P_NODE_8873_length_191_cov_1.929577_g8726_i0 PRJNA380416 8873 191 1.929577 3.68549207 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 337 4.05e-88   NTclustered gi|2088238071|ref|NC_056910.1| 88167 g8726 i0 98.429 100.335078534031 191 3 100 0 1 191 14659 14849 Poterioochromonas malhamensis strain SZCZR2049 plastid, complete genome blastn 19164 337 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
22078539 22078539 PRJNA380416_P_NODE_10958_length_169_cov_2.433333_g10811_i0 PRJNA380416 10958 169 2.433333 4.11233277 Spumella-like flagellate JBM18 293206 SAR_Eukaryotes SAR_Eukaryotes 191 2.87e-44   NTclustered gi|161015626|gb|EF577224.1| 293206 g10811 i0 86.982 85.4497041420118 169 22 100 0 1 169 1025 857 Spumella-like flagellate JBM18 alpha-tubulin gene, partial cds blastn 14441 191 1 Eukaryota Sar     Chrysophyceae       Spumella-like flagellate JBM18
22078548 22078548 PRJNA380416_P_NODE_13298_length_162_cov_1.353982_g13151_i0 PRJNA380416 13298 162 1.353982 2.19345084 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 300 4.36e-77   NTclustered gi|859811083|gb|KM818001.1| 88167 g13151 i0 100 101 162 0 100 0 1 162 1093 932 Poterioochromonas malhamensis strain SAG 933.1c 23S ribosomal RNA gene, partial sequence; plastid blastn 16362 300 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
23354060 23354060 PRJNA380416_P_NODE_11539_length_166_cov_1.863248_g11392_i0 PRJNA380416 11539 166 1.863248 3.09299168 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 111 2.26e-20   NTclustered gi|673017229|ref|XM_008864354.1| 157072 g11392 i0 83.2 0.753012048192771 125 18 75 3 22 145 312 434 Aphanomyces invadans hypothetical protein mRNA blastn 125 111 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
24628304 24628304 PRJNA380416_P_NODE_10080_length_179_cov_1.161538_g9933_i0 PRJNA380416 10080 179 1.161538 2.07915302 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 259 8.32e-65   NTclustered gi|1389430803|gb|MH341631.1| 1938391 g9933 i0 92.737 54.4301675977654 179 13 100 0 1 179 2037 1859 Chilodonella hexasticha strain C. hexasticha SC large subunit ribosomal RNA gene, partial sequence blastn 9743 259 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;