RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA380416" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA380416 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8055248 8055248 PRJNA380416_P_NODE_12007_length_165_cov_1.318966_g11860_i0 PRJNA380416 12007 165 1.318966 2.1762939 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 305 9.59e-79   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g11860 i0 100 69.9090909090909 165 0 100 0 1 165 449 613 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 11535 305 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
13155765 13155765 PRJNA380416_P_NODE_9511_length_185_cov_1.110294_g9364_i0 PRJNA380416 9511 185 1.110294 2.0540439 Heterostelium album 2086695 Evosea other_Eukaryota 111 2.57e-20   NTclustered gi|1160571044|ref|XM_020575016.1| 670386 g9364 i0 84.685 5.06486486486487 111 17 60 0 75 185 283 393 Polysphondylium pallidum PN500 40S ribosomal protein S14 (rps14), partial mRNA blastn 937 111 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
17651730 17651730 PRJNA380416_P_NODE_12734_length_164_cov_0.886957_g12587_i0 PRJNA380416 12734 164 0.886957 1.45460948 Tubulinea 555369 Tubulinea other_Eukaryota 303 3.42e-78   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g12587 i0 100 18.359756097561 164 0 100 0 1 164 1477 1640 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 3011 303 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
19527856 19527856 PRJNA380416_P_NODE_13636_length_162_cov_0.893805_g13489_i0 PRJNA380416 13636 162 0.893805 1.4479641 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 300 4.36e-77   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g13489 i0 100 97.9197530864197 162 0 100 0 1 162 1042 1203 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 15863 300 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;