RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA380129" and tax_superkingdom = "Viruses"

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tax_kingdom 2

tax_superkingdom 1

  • Viruses · 3 ✖

bioproject 1

  • PRJNA380129 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2952629 2952629 PRJNA380129_P_NODE_3323_length_236_cov_2.236715_g2999_i0 PRJNA380129 3323 236 2.236715 5.2786474 Lentivirus equinfane 3418648 Viruses Viruses 436 4.999999999999999e-118   NTclustered gi|323836|gb|M16575.1|EIAVCG 11665 g2999 i0 100 33.864406779661 236 0 100 0 1 236 2257 2492 Equine infectious anemia virus proviral DNA, complete genome blastn 7992 436 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus equinfane
16979349 16979349 PRJNA380129_P_NODE_3694_length_152_cov_1.357724_g3370_i0 PRJNA380129 3694 152 1.357724 2.06374048 brine shrimp yue-like virus 7 2900459 Viruses Viruses 276 6.770000000000001e-70   NTclustered gi|2209095278|gb|OL472843.1| 2900459 g3370 i0 99.342 5 152 1 100 0 1 152 787 636 MAG: Brine shrimp yue-like virus 7 isolate BH/15 segment 2 hypothetical protein gene, complete cds blastn 760 276 1 Viruses   Orthornavirae Negarnaviricota Yunchangviricetes Goujianvirales Yueviridae   brine shrimp yue-like virus 7
24628303 24628303 PRJNA380129_P_NODE_540_length_850_cov_2.572473_g267_i0 PRJNA380129 540 850 2.572473 21.8660205 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 634 6.679999999999999e-177   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g267 i0 92.5 0.812941176470588 440 33 81 0 1 440 6373 6812 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 691 634 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;