RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA380129" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA380129 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11277309 11277309 PRJNA380129_P_NODE_1909_length_406_cov_4.360743_g1585_i0 PRJNA380129 1909 406 4.360743 17.70461658 Streptococcus 1301 Bacteria Bacteria 726 0   NTclustered gi|1943211519|gb|CP065707.1| 1303 g1585 i0 99.499 337.71921182266 399 2 98 0 8 406 424049 424447 Streptococcus oralis strain FDAARGOS_885 chromosome, complete genome blastn 137114 732 0.991803278688525 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis
18925572 18925572 PRJNA380129_P_NODE_3595_length_169_cov_3.400000_g3271_i0 PRJNA380129 3595 169 3.4 5.746 FCB group 1783270 Bacteria Bacteria 303 3.53e-78   NTclustered gi|2800799246|gb|CP093959.1| 1358 g3271 i0 99.401 520.769230769231 167 1 99 0 1 167 522786 522952 Lactococcus lactis strain FAM 17919 chromosome, complete genome blastn 88010 303 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;