RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA379145" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA379145 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1675915 1675915 PRJNA379145_P_NODE_8742_length_1027_cov_2.353119_g7716_i0 PRJNA379145 8742 1027 2.353119 24.16653213 Amphimedon queenslandica 400682 Porifera other_Eukaryota 73.1 8e-8   NTclustered gi|1133472263|ref|XM_003388820.3| 400682 g7716 i0 75.325 0.18792599805258 154 36 15 2 497 649 540 692 PREDICTED: Amphimedon queenslandica pro-cathepsin H-like (LOC100636590), mRNA blastn 193 73.1 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon queenslandica
16978544 16978544 PRJNA379145_P_NODE_9174_length_999_cov_5.840580_g8102_i0 PRJNA379145 9174 999 5.84058 58.3473942 Dysidea avara 196820 Porifera other_Eukaryota 58.4 0.002   NTclustered gi|2749538842|ref|XM_066035469.1| 196820 g8102 i0 92.5 0.04004004004004 40 3 4 0 618 657 365 326 PREDICTED: Dysidea avara putative carbonic anhydrase 3 (LOC136243924), mRNA blastn 40 58.4 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Dysideidae Dysidea Dysidea avara
17651642 17651642 PRJNA379145_P_NODE_43854_length_272_cov_1.815900_g41702_i0 PRJNA379145 43854 272 1.8159 4.939248 root 1 Root_unresolved Root_unresolved 54.7 0.007   NTclustered gi|2746749987|ref|XM_065985809.1| 121494 g41702 i0 100 2.21691176470588 29 0 11 0 66 94 154 126 PREDICTED: Oscarella lobularis uncharacterized protein (LOC136196282), mRNA blastn 603 54.7 1 Eukaryota Opisthokonta Metazoa Porifera Homoscleromorpha Homosclerophorida Oscarellidae Oscarella Oscarella lobularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;