RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA379145" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA379145 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
400575 400575 PRJNA379145_P_NODE_11561_length_874_cov_1.853746_g10252_i0 PRJNA379145 11561 874 1.853746 16.20174004 Opisthorchis viverrini 6198 Platyhelminthes Platyhelminthes 56.5 0.007   NTclustered gi|684403707|ref|XM_009175624.1| 6198 g10252 i0 92.308 0.0446224256292906 39 3 4 0 700 738 629 591 Opisthorchis viverrini hypothetical protein partial mRNA blastn 39 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Opisthorchis Opisthorchis viverrini
400690 400690 PRJNA379145_P_NODE_18661_length_628_cov_3.717647_g16850_i0 PRJNA379145 18661 628 3.717647 23.34682316 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 56.5 0.005   NTclustered gi|690483390|emb|LN026454.1| 99802 g16850 i0 100 0.0477707006369427 30 0 5 0 238 267 4455 4426 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0025969 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
5504743 5504743 PRJNA379145_P_NODE_6685_length_1177_cov_4.341783_g5880_i0 PRJNA379145 6685 1177 4.341783 51.10278591 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 1253 0   NTclustered gi|1369885|gb|L78441.1|SCM14332R 6183 g5880 i0 89.604 36.7196261682243 1010 71 83 13 12 992 1005 1 Schistosoma mansoni 14-3-3-2 mRNA, 3' end of cds blastn 43219 1253 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
6778488 6778488 PRJNA379145_P_NODE_29046_length_430_cov_5.763224_g26944_i0 PRJNA379145 29046 430 5.763224 24.7818632 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 721 0   NTclustered gi|68479954|gb|DQ076149.1| 6182 g26944 i0 96.977 1 430 12 100 1 1 430 449 21 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 430 721 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
13827521 13827521 PRJNA379145_P_NODE_65051_length_172_cov_2.302158_g62897_i0 PRJNA379145 65051 172 2.302158 3.95971176 Metazoa 33208 Platyhelminthes Platyhelminthes 110 8.44e-20   NTclustered gi|169146613|emb|AM933581.1| 6192 g62897 i0 88.764 7.13372093023256 89 10 52 0 30 118 1 89 Fasciola hepatica partial mRNA for tubulin alpha-2 (alpha-tub2 gene) blastn 1227 110 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Fasciolidae Fasciola Fasciola hepatica
22750827 22750827 PRJNA379145_P_NODE_31798_length_391_cov_2.949721_g29666_i0 PRJNA379145 31798 391 2.949721 11.53340911 Rhabdocoela 27901 Platyhelminthes Platyhelminthes 82.4 4.77e-11   NTclustered gi|667755633|gb|KJ887567.1| 1525099 g29666 i0 92.982 2.89002557544757 57 3 15 1 158 214 1458 1403 Paraustrorhynchus sp. n. TJ-2014 voucher DNA356GOA 28S ribosomal RNA gene, partial sequence blastn 1130 82.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Polycystididae Paraustrorhynchus Paraustrorhynchus sp. n. TJ-2014

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;