RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

24 rows where analysis = "blastn", bioproject = "PRJNA379145" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA379145 · 24 ✖

analysis 1

  • blastn · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
400589 400589 PRJNA379145_P_NODE_12061_length_850_cov_3.632803_g10698_i0 PRJNA379145 12061 850 3.632803 30.8788255 Strongyloides ratti 34506 Nematoda Nematoda 448 9.339999999999999e-121   NTclustered gi|1376147725|ref|XM_024654528.1| 34506 g10698 i0 79.871 36.0176470588235 621 117 73 8 233 849 1403 787 Strongyloides ratti ATP synthase subunit alpha, mitochondrial (SRAE_2000334600), partial mRNA blastn 30615 448 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
400841 400841 PRJNA379145_P_NODE_30001_length_416_cov_2.318538_g27885_i0 PRJNA379145 30001 416 2.318538 9.64511808 Pristionchus pauli 376545 Nematoda Nematoda 217 1.34e-51   NTclustered gi|150982019|gb|EF634598.1| 376545 g27885 i0 79.365 4.72355769230769 315 59 75 6 1 312 363 52 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 1965 217 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
401003 401003 PRJNA379145_P_NODE_46141_length_256_cov_2.448430_g43988_i0 PRJNA379145 46141 256 2.44843 6.2679808 Pristionchus maxplancki 1317128 Nematoda Nematoda 161 3.71e-35   NTclustered gi|478487019|gb|KC491689.1| 1317128 g43988 i0 78.462 62.18359375 260 44 98 8 4 254 317 61 Pristionchus maxplancki strain RS5594 large subunit ribosomal protein 27a (rpl27a) gene, partial cds blastn 15919 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus maxplancki
1675519 1675519 PRJNA379145_P_NODE_35362_length_348_cov_3.146032_g33216_i0 PRJNA379145 35362 348 3.146032 10.94819136 Meloidogyne graminicola 189291 Nematoda Nematoda 217 1.1e-51   NTclustered gi|1377671598|gb|MF166629.1| 189291 g33216 i0 86.567 0.577586206896552 201 21 58 4 114 314 195 1 Meloidogyne graminicola clone Mg28330 hypothetical protein mRNA, complete cds blastn 201 217 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
2951789 2951789 PRJNA379145_P_NODE_72103_length_154_cov_2.479339_g69948_i0 PRJNA379145 72103 154 2.479339 3.81818206 Caenorhabditis remanei 31234 Nematoda Nematoda 187 3.319999999999999e-43   NTclustered gi|2445369491|ref|XM_003103378.2| 31234 g69948 i0 88.816 99.7662337662338 152 17 99 0 3 154 1370 1219 Caenorhabditis remanei uncharacterized protein (GCK72_012055), partial mRNA blastn 15364 187 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
6778430 6778430 PRJNA379145_P_NODE_25286_length_490_cov_25.846827_g23252_i0 PRJNA379145 25286 490 25.846827 126.6494523 Strongyloides papillosus 174720 Nematoda Nematoda 202 4.49e-47   NTclustered gi|690018840|emb|LM526136.1| 174720 g23252 i0 79.649 5.43673469387755 285 54 58 4 78 360 7759 8041 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000493 blastn 2664 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
10002101 10002101 PRJNA379145_P_NODE_24868_length_498_cov_2.548387_g22844_i0 PRJNA379145 24868 498 2.548387 12.69096726 Metazoa 33208 Nematoda Nematoda 121 1.31e-22   NTclustered gi|158821894|gb|EU195958.1| 473172 g22844 i0 91.86 16.9357429718875 86 7 17 0 1 86 1977 1892 Protorhabditis sp. JB122 28S ribosomal RNA gene, partial sequence blastn 8434 121 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Protorhabditis Protorhabditis sp. JB122
10002159 10002159 PRJNA379145_P_NODE_5368_length_1301_cov_3.514196_g4710_i0 PRJNA379145 5368 1301 3.514196 45.71968996 Opisthokonta 33154 Nematoda Nematoda 62.1 2.21e-4   NTclustered gi|2082280471|ref|XM_043078792.1| 6279 g4710 i0 100 1.50960799385088 33 0 3 0 1 33 1411 1443 Brugia malayi Bestrophin family protein (Bm9146), partial mRNA blastn 1964 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
10604560 10604560 PRJNA379145_P_NODE_31589_length_394_cov_3.282548_g29458_i0 PRJNA379145 31589 394 3.282548 12.93323912 Rhabditoides inermis 96661 Nematoda Nematoda 265 4.4499999999999995e-66   NTclustered gi|256709332|gb|GQ422341.1| 96661 g29458 i0 80.636 42.489847715736 346 63 87 4 1 344 65 408 Rhabditoides inermis large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 16741 265 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditoides Rhabditoides inermis
10604581 10604581 PRJNA379145_P_NODE_32969_length_376_cov_2.495627_g30828_i0 PRJNA379145 32969 376 2.495627 9.38355752 Strongyloides ratti 34506 Nematoda Nematoda 56.5 0.003   NTclustered gi|1376138179|ref|XM_024649284.1| 34506 g30828 i0 92.5 0.106382978723404 40 1 10 2 296 334 23135 23173 Strongyloides ratti Immunoglobulin subtype 2 domain and Immunoglobulin subtype domain and Fibronectin, type III domain and Immunoglobulin-like domain and Immunoglobulin I-set domain and Immunoglobulin-like fold domain-containing protein (SRAE_1000223200), partial mRNA blastn 40 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
10604758 10604758 PRJNA379145_P_NODE_52269_length_221_cov_2.414894_g50115_i0 PRJNA379145 52269 221 2.414894 5.33691574 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.02   NTclustered gi|413002387|emb|Z47745.2| 6239 g50115 i0 100 0.253393665158371 28 0 13 0 178 205 21423 21450 Caenorhabditis elegans Cosmid T19H5, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
11879879 11879879 PRJNA379145_P_NODE_67510_length_166_cov_1.112782_g65356_i0 PRJNA379145 67510 166 1.112782 1.84721812 Caenorhabditis elegans 6239 Nematoda Nematoda 102 1.36e-17   NTclustered gi|103421853|emb|AM231685.1| 6239 g65356 i0 89.024 1.59036144578313 82 9 49 0 14 95 622 703 Caenorhabditis elegans partial mRNA for GDP-mannose 4,6-dehydratase (gmd-2 gene), clone F56H6.5 blastn 264 102 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13154513 13154513 PRJNA379145_P_NODE_31291_length_398_cov_5.964384_g29162_i0 PRJNA379145 31291 398 5.964384 23.73824832 Pristionchus sp. 13 RS5231 452807 Nematoda Nematoda 82.4 4.86e-11   NTclustered gi|150982219|gb|EF634698.1| 452807 g29162 i0 87.324 1.00251256281407 71 9 18 0 298 368 71 1 Pristionchus sp. 13 RS5231 large subunit ribosomal protein 29 (rpl-29) mRNA, complete cds blastn 399 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 13 RS5231
14429447 14429447 PRJNA379145_P_NODE_24532_length_503_cov_1272.714894_g22514_i0 PRJNA379145 24532 503 1272.714894 6401.75591682 Strongyloides ratti 34506 Nematoda Nematoda 536 1.1099999999999999e-147   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g22514 i0 86 221.165009940358 500 70 99 0 1 500 364 863 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 111246 536 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
15703511 15703511 PRJNA379145_P_NODE_32513_length_382_cov_1.865330_g30377_i0 PRJNA379145 32513 382 1.86533 7.1255606 Pristionchus hoplostomus 1355913 Nematoda Nematoda 161 5.799999999999998e-35   NTclustered gi|524845312|gb|KC819366.1| 1355913 g30377 i0 80.717 30.4633507853403 223 29 57 11 97 312 264 49 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 11637 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
18252637 18252637 PRJNA379145_P_NODE_51295_length_226_cov_2.238342_g49141_i0 PRJNA379145 51295 226 2.238342 5.05865292 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 82.4 2.57e-11   NTclustered gi|150984760|gb|EF634966.1| 452809 g49141 i0 77.778 29.5442477876106 135 28 59 2 5 138 182 49 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 25 (rps-25) mRNA, partial cds blastn 6677 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
18925498 18925498 PRJNA379145_P_NODE_44575_length_267_cov_1.679487_g42423_i0 PRJNA379145 44575 267 1.679487 4.48423029 Opisthokonta 33154 Nematoda Nematoda 139 1.82e-28   NTclustered gi|1972266864|ref|NM_068935.7| 6239 g42423 i0 81.548 19.7865168539326 168 31 63 0 5 172 241 74 Caenorhabditis elegans ADP-ribosylation factor (arf-5), mRNA blastn 5283 139 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
20802427 20802427 PRJNA379145_P_NODE_51157_length_227_cov_1.835052_g49003_i0 PRJNA379145 51157 227 1.835052 4.16556804 Ostertagia ostertagi 6317 Nematoda Nematoda 132 2.52e-26   NTclustered gi|371486395|gb|JF930344.1| 6317 g49003 i0 81.065 8.34801762114537 169 29 74 3 12 178 175 8 Ostertagia ostertagi beta-tubulin 1 (tbb-1) mRNA, complete cds blastn 1895 132 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
22077358 22077358 PRJNA379145_P_NODE_35198_length_350_cov_2.258675_g33052_i0 PRJNA379145 35198 350 2.258675 7.9053625 Strongyloides papillosus 174720 Nematoda Nematoda 65.8 4.25e-6   NTclustered gi|687022641|emb|LM525555.1| 174720 g33052 i0 83.824 0.194285714285714 68 11 19 0 6 73 158611 158678 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000001 blastn 68 65.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
22750882 22750882 PRJNA379145_P_NODE_62738_length_179_cov_2.027397_g60584_i0 PRJNA379145 62738 179 2.027397 3.62904063 Trichostrongylidae 6315 Nematoda Nematoda 174 3.1e-39   NTclustered gi|371486393|gb|JF930343.1| 6317 g60584 i0 84.358 11.5251396648045 179 26 99 2 2 179 1052 1229 Ostertagia ostertagi alpha tubulin (tba-1) mRNA, complete cds blastn 2063 174 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
23352750 23352750 PRJNA379145_P_NODE_28579_length_437_cov_2.529703_g26484_i0 PRJNA379145 28579 437 2.529703 11.05480211 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 193 2.38e-44   NTclustered gi|150984457|gb|EF634871.1| 452809 g26484 i0 77.848 20.8443935926773 316 66 72 3 42 355 16 329 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 9109 193 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
24025733 24025733 PRJNA379145_P_NODE_14419_length_755_cov_97.300554_g12859_i0 PRJNA379145 14419 755 97.300554 734.6191827 Metazoa 33208 Nematoda Nematoda 69.4 7.52e-7   NTclustered gi|100913262|gb|DQ516397.1| 34506 g12859 i0 88.525 0.370860927152318 61 2 8 2 97 155 991 934 Strongyloides ratti acidic ribosomal protein P0 (rpa1) and translationally controlled tumor protein-like protein (tct1) genes, partial cds blastn 280 69.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
24025781 24025781 PRJNA379145_P_NODE_37139_length_329_cov_4.202703_g34989_i0 PRJNA379145 37139 329 4.202703 13.82689287 Metazoa 33208 Nematoda Nematoda 331 3.55e-86   NTclustered gi|1376146183|ref|XM_024653652.1| 34506 g34989 i0 85.185 88.1671732522796 324 46 98 2 6 328 1211 889 Strongyloides ratti ATP synthase subunit beta (SRAE_2000256800), partial mRNA blastn 29007 331 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
24626870 24626870 PRJNA379145_P_NODE_17500_length_657_cov_2024.977564_g15749_i0 PRJNA379145 17500 657 2024.977564 13304.10259548 Strongyloides ratti 34506 Nematoda Nematoda 377 9.5e-100   NTclustered gi|1376136641|ref|XM_024648415.1| 34506 g15749 i0 77.955 57.9802130898021 626 122 94 15 40 657 1110 493 Strongyloides ratti Actin, alpha cardiac muscle 1 (SRAE_1000145800), partial mRNA blastn 38093 377 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;