RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA379145" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA379145 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2951760 2951760 PRJNA379145_P_NODE_68103_length_164_cov_1.816794_g65949_i0 PRJNA379145 68103 164 1.816794 2.97954216 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 292 7.41e-75   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g65949 i0 98.78 104.890243902439 164 2 100 0 1 164 1101882 1102045 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 17202 292 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
5504762 5504762 PRJNA379145_P_NODE_69285_length_161_cov_1.804688_g67131_i0 PRJNA379145 69285 161 1.804688 2.90554768 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 272 9.43e-69   NTclustered gi|2874253789|emb|OY969773.1| 412054 g67131 i0 97.484 20.8509316770186 159 4 99 0 3 161 421716 421874 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 3357 272 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
8054345 8054345 PRJNA379145_P_NODE_64527_length_174_cov_1.482270_g62373_i0 PRJNA379145 64527 174 1.48227 2.5791498 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 228 2.2699999999999997e-55   NTclustered gi|575456455|gb|CP007128.1| 861299 g62373 i0 90.23 14.3275862068966 174 17 100 0 1 174 3043738 3043565 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 2493 228 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;