RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA379145" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA379145 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
400759 400759 PRJNA379145_P_NODE_24081_length_512_cov_2.127349_g22079_i0 PRJNA379145 24081 512 2.127349 10.89202688 Anneissia japonica 1529436 Echinodermata other_Eukaryota 182 6.13e-41   NTclustered gi|1826617272|ref|XM_033241562.1| 1529436 g22079 i0 79.767 37.404296875 257 46 50 5 100 353 371 118 PREDICTED: Anneissia japonica histone H2B, gonadal-like (LOC117101580), mRNA blastn 19151 182 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
5504691 5504691 PRJNA379145_P_NODE_61325_length_184_cov_1.754967_g59171_i0 PRJNA379145 61325 184 1.754967 3.22913928 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 174 3.21e-39   NTclustered gi|2037995275|ref|XM_041610581.1| 7654 g59171 i0 90.226 24.7391304347826 133 13 72 0 1 133 344 212 PREDICTED: Lytechinus variegatus dynein light chain 2, cytoplasmic-like (LOC121417029), mRNA blastn 4552 174 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
9329248 9329248 PRJNA379145_P_NODE_74188_length_150_cov_1.504274_g72033_i0 PRJNA379145 74188 150 1.5042739999999999 2.256411 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 84.2 4.33e-12   NTclustered gi|1752341932|ref|XM_030975762.1| 7668 g72033 i0 88.406 0.46 69 8 46 0 15 83 159 91 PREDICTED: Strongylocentrotus purpuratus dynein light chain LC6, flagellar outer arm (LOC591043), mRNA blastn 69 84.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
10604464 10604464 PRJNA379145_P_NODE_24149_length_511_cov_1.663180_g22143_i0 PRJNA379145 24149 511 1.66318 8.4988498 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 65.8 6.42e-6   NTclustered gi|1752365610|ref|XM_030987174.1| 7668 g22143 i0 89.091 1.56555772994129 55 3 11 1 157 211 1441 1390 PREDICTED: Strongylocentrotus purpuratus ribosome biogenesis protein BMS1 homolog (LOC587885), mRNA blastn 800 65.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
11277281 11277281 PRJNA379145_P_NODE_66789_length_167_cov_3.074627_g64635_i0 PRJNA379145 66789 167 3.074627 5.13462709 Metazoa 33208 Echinodermata other_Eukaryota 172 1.0299999999999999e-38   NTclustered gi|1752341932|ref|XM_030975762.1| 7668 g64635 i0 86.538 91.5748502994012 156 21 93 0 12 167 97 252 PREDICTED: Strongylocentrotus purpuratus dynein light chain LC6, flagellar outer arm (LOC591043), mRNA blastn 15293 172 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;