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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA379145" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA379145 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1675489 1675489 PRJNA379145_P_NODE_32442_length_383_cov_1.588571_g30306_i0 PRJNA379145 32442 383 1.588571 6.08422693 Neocallimastix frontalis 4757 Fungi Fungi 254 9.33e-63   NTclustered gi|387233102|gb|JN033861.1| 4757 g30306 i0 81.231 45.5039164490862 325 51 84 10 12 331 184 503 Neocallimastix frontalis strain PMA02 aconitate hydratase (AH2) mRNA, partial cds blastn 17428 254 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix frontalis
4228295 4228295 PRJNA379145_P_NODE_64664_length_173_cov_3.000000_g62510_i0 PRJNA379145 64664 173 3 5.19 Gromochytrium mamkaevae 1486924 Fungi Fungi 80.5 6.67e-11   NTclustered gi|612507318|gb|KF586842.1| 1486924 g62510 i0 88.235 8.5028901734104 68 7 39 1 1 67 6179 6112 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1471 80.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
8726756 8726756 PRJNA379145_P_NODE_65067_length_172_cov_2.129496_g62913_i0 PRJNA379145 65067 172 2.129496 3.66273312 Opisthokonta 33154 Fungi Fungi 318 1.2899999999999999e-82   NTclustered gi|19386988|gb|AF450112.1| 109953 g62913 i0 100 91.1046511627907 172 0 100 0 1 172 378 549 Monoblepharis insignis translation elongation factor 1-alpha gene, partial cds blastn 15670 318 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Monoblepharidaceae Monoblepharis Monoblepharis insignis
11879459 11879459 PRJNA379145_P_NODE_27050_length_460_cov_3.683841_g24981_i0 PRJNA379145 27050 460 3.683841 16.9456686 Polychytrium aggregatum 110093 Fungi Fungi 287 1.12e-72   NTclustered gi|2432131102|ref|XM_053109247.1| 110093 g24981 i0 82.371 65.2521739130435 329 58 72 0 113 441 481 153 Polychytrium aggregatum putative ubiquitin/ribosomal protein S27a fusion protein (BJ171DRAFT_487026), mRNA blastn 30016 287 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
14429593 14429593 PRJNA379145_P_NODE_36632_length_334_cov_4.259136_g34484_i0 PRJNA379145 36632 334 4.259136 14.22551424 Batrachochytrium dendrobatidis 109871 Fungi Fungi 115 3.96e-21   NTclustered gi|575480991|ref|XM_006679727.1| 684364 g34484 i0 80.392 0.592814371257485 153 28 46 2 58 209 25 176 Batrachochytrium dendrobatidis JAM81 uncharacterized protein (BATDEDRAFT_12294), partial mRNA blastn 198 115 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
16977937 16977937 PRJNA379145_P_NODE_14674_length_746_cov_347.336606_g11797_i1 PRJNA379145 14674 746 347.336606 2591.13108076 Synchytrium microbalum 1806994 Fungi Fungi 466 2.2499999999999998e-126   NTclustered gi|1759154564|ref|XM_031169821.1| 1806994 g11797 i1 85.845 58.6528150134048 438 62 59 0 102 539 444 7 Synchytrium microbalum uncharacterized protein (SmJEL517_g03893), partial mRNA blastn 43755 466 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
20801971 20801971 PRJNA379145_P_NODE_11137_length_895_cov_2.845708_g9869_i0 PRJNA379145 11137 895 2.845708 25.4690866 Fimicolochytrium jonesii 1396493 Fungi Fungi 614 9.189999999999999e-171   NTclustered gi|2432080769|ref|XM_053070516.1| 1396493 g9869 i0 80.31 92.8256983240223 838 142 93 10 1 832 1034 214 Fimicolochytrium jonesii mitochondrial carrier domain-containing protein (EV422DRAFT_532223), mRNA blastn 83079 614 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
24627420 24627420 PRJNA379145_P_NODE_68020_length_164_cov_2.328244_g65866_i0 PRJNA379145 68020 164 2.328244 3.81832016 Rhizophydium sp. JEL138 139068 Fungi Fungi 165 1.69e-36   NTclustered gi|30088585|gb|AY138801.1| 139068 g65866 i0 85.714 15.9939024390244 161 17 96 5 6 163 1232 1075 Rhizophydium sp. JEL138 beta-tubulin (btub1) gene, partial cds blastn 2623 165 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Rhizophydiaceae Rhizophydium Rhizophydium sp. JEL138

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;