RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA379145" and tax_phylum = "Brachiopoda"

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tax_superkingdom 1

tax_phylum 1

  • Brachiopoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA379145 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10604869 10604869 PRJNA379145_P_NODE_66029_length_169_cov_3.544118_g63875_i0 PRJNA379145 66029 169 3.544118 5.98955942 Lingula anatina 7574 Brachiopoda other_Eukaryota 84.2 5e-12   NTclustered gi|919047960|ref|XM_013551703.1| 7574 g63875 i0 90.476 0.70414201183432 63 6 37 0 1 63 1508 1570 PREDICTED: Lingula anatina eukaryotic translation initiation factor 2 subunit 3, Y-linked (LOC106171384), mRNA blastn 119 84.2 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina
13154269 13154269 PRJNA379145_P_NODE_12891_length_815_cov_3.516624_g11457_i0 PRJNA379145 12891 815 3.516624 28.6604856 Lingula anatina 7574 Brachiopoda other_Eukaryota 71.3 2.26e-7   NTclustered gi|919042720|ref|XM_013549169.1| 7574 g11457 i0 97.561 5.63803680981595 41 1 5 0 488 528 1086 1126 PREDICTED: Lingula anatina homeobox protein Nkx-2.2 (LOC106169639), mRNA blastn 4595 71.3 1 Eukaryota Opisthokonta Metazoa Brachiopoda Lingulata Lingulida Lingulidae Lingula Lingula anatina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;