RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA379145" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA379145 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4228171 4228171 PRJNA379145_P_NODE_51524_length_225_cov_1.994792_g49370_i0 PRJNA379145 51524 225 1.994792 4.488282 Peredibacter starrii 28202 Bacteria Bacteria 359 1.0499999999999999e-94   NTclustered gi|2631252187|gb|CP139487.1| 28202 g49370 i0 95.556 147.986666666667 225 9 100 1 1 225 511846 512069 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 33297 359 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
20200150 20200150 PRJNA379145_P_NODE_57256_length_199_cov_2.891566_g55102_i0 PRJNA379145 57256 199 2.891566 5.75421634 Peredibacter 263370 Bacteria Bacteria 368 1.51e-97   NTclustered gi|2631252187|gb|CP139487.1| 28202 g55102 i0 100 245.311557788945 199 0 100 0 1 199 511473 511275 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 48817 368 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
22077584 22077584 PRJNA379145_P_NODE_61338_length_184_cov_1.688742_g59184_i0 PRJNA379145 61338 184 1.688742 3.10728528 Peredibacter starrii 28202 Bacteria Bacteria 305 1.09e-78   NTclustered gi|2631252187|gb|CP139487.1| 28202 g59184 i0 96.739 4.01086956521739 184 5 100 1 1 184 512363 512181 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 738 305 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
23353014 23353014 PRJNA379145_P_NODE_54539_length_211_cov_1.325843_g52385_i0 PRJNA379145 54539 211 1.325843 2.79752873 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 156 1.37e-33   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g52385 i0 97.778 67.0331753554502 90 2 77 0 122 211 1292358 1292269 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 14144 156 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;