RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA379145" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA379145 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2349336 2349336 PRJNA379145_P_NODE_36082_length_340_cov_2.110749_g33934_i0 PRJNA379145 36082 340 2.110749 7.1765466 Chthonomonas 1077265 Bacteria Bacteria 135 3.1e-27   NTclustered gi|526641997|ref|NR_103994.1| 454171 g33934 i0 74.652 45.1529411764706 359 66 100 18 1 340 1667 1315 Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence blastn 15352 135 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea
2349394 2349394 PRJNA379145_P_NODE_72162_length_154_cov_1.983471_g70007_i0 PRJNA379145 72162 154 1.983471 3.05454534 Fimbriimonas 1005038 Bacteria Bacteria 231 1.5099999999999998e-56   NTclustered gi|663071213|gb|CP007139.1| 661478 g70007 i0 94.156 145.655844155844 154 5 99 4 3 154 26940 27091 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 22431 231 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
7451967 7451967 PRJNA379145_P_NODE_44746_length_266_cov_1.171674_g42594_i0 PRJNA379145 44746 266 1.171674 3.11665284 Fimbriimonas 1005038 Bacteria Bacteria 320 6.04e-83   NTclustered gi|663071213|gb|CP007139.1| 661478 g42594 i0 88.433 7.54887218045113 268 27 100 4 1 266 29147 28882 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 2008 320 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
8726742 8726742 PRJNA379145_P_NODE_59067_length_192_cov_1.836478_g56913_i0 PRJNA379145 59067 192 1.836478 3.52603776 Fimbriimonas 1005038 Bacteria Bacteria 237 4.25e-58   NTclustered gi|663071213|gb|CP007139.1| 661478 g56913 i0 89.119 31.21875 193 18 100 3 1 192 28775 28585 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 5994 237 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;