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contig_metadata

29 rows where analysis = "blastn", bioproject = "PRJNA379145" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 29 ✖

bioproject 1

  • PRJNA379145 · 29 ✖

analysis 1

  • blastn · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
400843 400843 PRJNA379145_P_NODE_30121_length_414_cov_17.587927_g28002_i0 PRJNA379145 30121 414 17.587927 72.81401778 Trebouxia aggregata 160068 Plants Plants 544 5.39e-150   NTclustered gi|162134340|gb|EU123979.1| 160068 g28002 i0 94.857 110.231884057971 350 14 84 3 3 349 2361 2013 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast blastn 45636 544 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
1073988 1073988 PRJNA379145_P_NODE_14541_length_751_cov_3.082173_g12974_i0 PRJNA379145 14541 751 3.082173 23.14711923 Chlorella 3071 Plants Plants 300 2.44e-76   NTclustered gi|760173366|gb|KP271968.1| 554065 g12974 i0 81.167 49.7989347536618 377 67 50 2 376 750 53682 53308 Chlorella variabilis isolate cvariabilis2014 mitochondrion, complete genome blastn 37399 300 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
1675600 1675600 PRJNA379145_P_NODE_41522_length_290_cov_3.914397_g39370_i0 PRJNA379145 41522 290 3.914397 11.3517513 Sarcinofilum mucosum 141643 Plants Plants 209 1.51e-49   NTclustered gi|1197510887|ref|NC_034709.1| 141643 g39370 i0 80.756 214.493103448276 291 37 100 11 1 290 147892 147620 Trichosarcina mucosa culture SAG:4.90 chloroplast, complete genome blastn 62203 209 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Sarcinofilaceae Sarcinofilum Sarcinofilum mucosum
3624826 3624826 PRJNA379145_P_NODE_7603_length_1103_cov_2.187850_g6696_i0 PRJNA379145 7603 1103 2.18785 24.1319855 Eukaryota 2759 Plants Plants 433 3.429999999999999e-116   NTclustered gi|926791444|ref|XM_014048742.1| 145388 g6696 i0 81.353 12.7733454215775 547 89 49 9 1 542 2455 2993 Monoraphidium neglectum adenosylhomocysteinase mRNA blastn 14089 433 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
4901948 4901948 PRJNA379145_P_NODE_40344_length_300_cov_1.805243_g38193_i0 PRJNA379145 40344 300 1.805243 5.415729 Micractinium 126838 Plants Plants 224 5.59e-54   NTclustered gi|1782128354|gb|MN649871.1| 126839 g38193 i0 83.607 77.84 244 34 80 6 59 299 43463 43223 Micractinium pusillum strain CCAP 232/1 mitochondrion, complete genome blastn 23352 226 0.991150442477876 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium pusillum
6778525 6778525 PRJNA379145_P_NODE_31286_length_398_cov_7.358904_g29157_i0 PRJNA379145 31286 398 7.358904 29.28843792 Trebouxia lynnae 1825957 Plants Plants 686 0   NTclustered gi|1016111943|gb|KU716051.1| 1825957 g29157 i0 98.705 65.9045226130653 386 5 97 0 1 386 6636 7021 Trebouxia lynnae 26S-18S intergenic spacer region, partial sequence; 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence; and 26S-18S rRNA intergenic spacer region, partial sequence blastn 26230 686 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
6778703 6778703 PRJNA379145_P_NODE_47946_length_245_cov_3.245283_g45793_i0 PRJNA379145 47946 245 3.245283 7.95094335 Lobosphaera incisa 312850 Plants Plants 163 9.79e-36   NTclustered gi|2717096004|gb|PP658226.1| 312850 g45793 i0 78.947 51.9836734693878 247 46 100 5 1 245 348 590 Lobosphaera incisa isolate CFRC-1 large subunit ribosomal RNA gene, partial sequence blastn 12736 163 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Lobosphaera Lobosphaera incisa
8054031 8054031 PRJNA379145_P_NODE_30427_length_410_cov_5.299735_g28304_i0 PRJNA379145 30427 410 5.299735 21.7289135 Trebouxia incrustata 135222 Plants Plants 549 1.1499999999999996e-151   NTclustered gi|1198337012|gb|MF164049.1| 135222 g28304 i0 92.876 93.0268292682927 379 25 92 2 1 378 158 535 Trebouxia incrustata voucher UTEX 784 large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 38141 549 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia incrustata
10604591 10604591 PRJNA379145_P_NODE_33929_length_364_cov_5.752266_g31784_i0 PRJNA379145 33929 364 5.752266 20.93824824 Trebouxia aggregata 160068 Plants Plants 422 2.28e-113   NTclustered gi|162134340|gb|EU123979.1| 160068 g31784 i0 98.734 95.6401098901099 237 3 65 0 1 237 1210 1446 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast blastn 34813 422 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
10604689 10604689 PRJNA379145_P_NODE_43209_length_277_cov_1.807377_g41057_i0 PRJNA379145 43209 277 1.807377 5.00643429 Chlorella variabilis 554065 Plants Plants 195 4e-45   NTclustered gi|552813385|ref|XM_005843877.1| 554065 g41057 i0 82.379 38.971119133574 227 37 82 2 12 238 1146 1369 Chlorella variabilis hypothetical protein (CHLNCDRAFT_59785) mRNA, complete cds blastn 10795 195 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
11277240 11277240 PRJNA379145_P_NODE_48929_length_239_cov_342.597087_g46775_i0 PRJNA379145 48929 239 342.597087 818.80703793 Eukaryota 2759 Plants Plants 398 2.4e-106   NTclustered gi|1273623725|gb|KY033354.1| 285713 g46775 i0 96.68 101.861924686192 241 5 100 3 1 239 7726 7487 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 24345 398 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
11879318 11879318 PRJNA379145_P_NODE_17470_length_658_cov_6.392000_g15720_i0 PRJNA379145 17470 658 6.392 42.05936 Chlamydomonas reinhardtii 3055 Plants Plants 339 4.49e-88   NTclustered gi|2082235498|ref|XM_001700320.2| 3055 g15720 i0 81.71 61.1717325227964 421 63 64 11 152 569 460 51 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g002300v5), mRNA blastn 40251 339 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
12552516 12552516 PRJNA379145_P_NODE_13190_length_802_cov_5.154746_g11741_i0 PRJNA379145 13190 802 5.154746 41.34106292 Eukaryota 2759 Plants Plants 351 7.09e-92   NTclustered gi|1861356367|gb|MT377411.1| 51329 g11741 i0 77.467 59.3254364089776 608 124 75 12 122 722 698 97 Polytomella parva clone 0016300147 40S ribosomal protein S2 (RPS2) mRNA, complete cds; plastid blastn 47579 351 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella parva
13154832 13154832 PRJNA379145_P_NODE_62431_length_180_cov_2.299320_g60277_i0 PRJNA379145 62431 180 2.29932 4.138776 Chlamydomonas reinhardtii 3055 Plants Plants 132 1.91e-26   NTclustered gi|2082239556|ref|XM_001699745.2| 3055 g60277 i0 79.888 3.18888888888889 179 36 99 0 2 180 173 351 Chlamydomonas reinhardtii ribosomal protein S3 (CHLRE_02g102250v5), mRNA blastn 574 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
15703220 15703220 PRJNA379145_P_NODE_10373_length_932_cov_2.416018_g9195_i0 PRJNA379145 10373 932 2.416018 22.51728776 Volvocales sp. NrCl902 2682054 Plants Plants 67.6 3.37e-6   NTclustered gi|1887912076|dbj|LC516060.1| 2682054 g9195 i0 87.097 0.207081545064378 62 5 7 3 8 69 118667 118725 Volvocales sp. NrCl902 leucoplast DNA, complete genome blastn 193 67.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales     Volvocales sp. NrCl902
15703629 15703629 PRJNA379145_P_NODE_43393_length_275_cov_6.900826_g41241_i0 PRJNA379145 43393 275 6.900826 18.9772715 uncultured Trebouxia photobiont 285713 Plants Plants 481 2.72e-131   NTclustered gi|94448749|emb|AJ969577.1| 285713 g41241 i0 98.182 89.3927272727273 275 5 100 0 1 275 1444 1718 Uncultured Trebouxia photobiont 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 26S rRNA gene (partial), isolate L-265-II blastn 24583 481 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
15703719 15703719 PRJNA379145_P_NODE_52993_length_218_cov_1.324324_g50839_i0 PRJNA379145 52993 218 1.324324 2.88702632 Trebouxia lynnae 1825957 Plants Plants 375 1.0099999999999998e-99   NTclustered gi|1812100161|ref|NC_045839.1| 1825957 g50839 i0 97.706 98.6651376146789 218 5 100 0 1 218 179109 179326 Trebouxia sp. TR9 chloroplast, partial genome blastn 21509 375 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
16978189 16978189 PRJNA379145_P_NODE_34974_length_353_cov_1.668750_g32828_i0 PRJNA379145 34974 353 1.66875 5.8906875 Chlamydomonas reinhardtii 3055 Plants Plants 259 1.83e-64   NTclustered gi|2082243702|ref|XM_043061450.1| 3055 g32828 i0 84.615 71.9773371104816 260 40 74 0 5 264 351 92 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g204250v5), mRNA blastn 25408 259 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
18252443 18252443 PRJNA379145_P_NODE_32715_length_379_cov_3.843931_g30576_i0 PRJNA379145 32715 379 3.843931 14.56849849 Stichococcus bacillaris 37433 Plants Plants 472 2.3399999999999997e-128   NTclustered gi|371782093|emb|HE610125.1| 37433 g30576 i0 89.779 41.9445910290237 362 34 95 3 21 379 7339 6978 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 15897 472 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
20200119 20200119 PRJNA379145_P_NODE_40756_length_296_cov_11.456274_g38605_i0 PRJNA379145 40756 296 11.456274 33.91057104 Eukaryota 2759 Plants Plants 542 1.34e-149   NTclustered gi|2559708966|dbj|LC761262.1| 167235 g38605 i0 99.662 100.027027027027 296 1 100 0 1 296 870 575 Uncultured Trebouxiophyceae SA07 gene for 18S rRNA, partial sequence blastn 29608 542 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Trebouxiophyceae
20802571 20802571 PRJNA379145_P_NODE_67737_length_165_cov_1.727273_g65583_i0 PRJNA379145 67737 165 1.727273 2.85000045 Chlorella sp. ArM0029B 1415603 Plants Plants 73.1 1.06e-8   NTclustered gi|1432229018|gb|MG669273.1| 1415603 g65583 i0 90.741 0.327272727272727 54 5 33 0 87 140 710 657 Chlorella sp. ArM0029B RHP1 protein mRNA, complete cds blastn 54 73.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp. ArM0029B
20802575 20802575 PRJNA379145_P_NODE_67977_length_164_cov_3.312977_g65823_i0 PRJNA379145 67977 164 3.312977 5.43328228 Bracteamorpha trainorii 1357777 Plants Plants 220 3.55e-53   NTclustered gi|523583544|gb|KC145441.1| 1357777 g65823 i0 90.909 100.451219512195 165 13 100 2 1 164 1205 1368 Sphaeropleales sp. KF-2013a strain BCP-CC1VF5A 28S ribosomal RNA gene, partial sequence blastn 16474 220 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Bracteamorphaceae Bracteamorpha Bracteamorpha trainorii
22077094 22077094 PRJNA379145_P_NODE_14658_length_747_cov_3.023810_g13082_i0 PRJNA379145 14658 747 3.02381 22.5878607 Monoraphidium neglectum 145388 Plants Plants 211 1.17e-49   NTclustered gi|926795717|ref|XM_014050538.1| 145388 g13082 i0 79.73 11.4859437751004 296 56 39 3 128 421 70 363 Monoraphidium neglectum 40S ribosomal protein S20-1 mRNA blastn 8580 211 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
22077398 22077398 PRJNA379145_P_NODE_39038_length_311_cov_9.172662_g36887_i0 PRJNA379145 39038 311 9.172662 28.52697882 Volvox carteri 3067 Plants Plants 54.7 0.008   NTclustered gi|349584|gb|L07946.1|VVCH1IA 3068 g36887 i0 100 0.186495176848875 29 0 9 0 190 218 1537 1509 Volvox carteri nagariensis histone (H1-I) gene, complete cds blastn 58 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
22077409 22077409 PRJNA379145_P_NODE_40398_length_299_cov_4.586466_g38247_i0 PRJNA379145 40398 299 4.586466 13.71353334 uncultured Apatococcus 1229086 Plants Plants 424 5.11e-114   NTclustered gi|1031961068|gb|KX025109.1| 1229086 g38247 i0 93.357 100.374581939799 286 19 96 0 1 286 1236 1521 Uncultured Apatococcus clone GOGs_K08 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 30012 424 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Apatococcus
22077470 22077470 PRJNA379145_P_NODE_47598_length_247_cov_8.336449_g45445_i0 PRJNA379145 47598 247 8.336449 20.59102903 Trebouxia incrustata 135222 Plants Plants 451 1.88e-122   NTclustered gi|1198337012|gb|MF164049.1| 135222 g45445 i0 99.595 101.384615384615 247 1 100 0 1 247 404 158 Trebouxia incrustata voucher UTEX 784 large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 25042 451 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia incrustata
23352891 23352891 PRJNA379145_P_NODE_40979_length_295_cov_1.652672_g38828_i0 PRJNA379145 40979 295 1.652672 4.8753824 Tetraselmis subcordiformis 3161 Plants Plants 60.2 1.64e-4   NTclustered gi|1835923798|gb|MT002480.1| 3161 g38828 i0 90.909 1.19322033898305 44 4 15 0 189 232 1220 1177 Tetraselmis subcordiformis cation channelrhodopsin 3 mRNA, complete cds blastn 352 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis subcordiformis
24025772 24025772 PRJNA379145_P_NODE_29679_length_420_cov_21.834625_g27566_i0 PRJNA379145 29679 420 21.834625 91.705425 root 1 Root_unresolved Root_unresolved 508 2e-139   NTclustered gi|922575246|gb|JQ921008.1| 103878 g27566 i0 93.353 92.4452380952381 346 20 82 3 78 420 906 1251 Trebouxia gigantea strain UTEX 2231 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 38827 510 0.996078431372549 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia gigantea
24627068 24627068 PRJNA379145_P_NODE_33500_length_369_cov_4.586310_g31358_i0 PRJNA379145 33500 369 4.58631 16.9234839 Coccomyxa subellipsoidea 248742 Plants Plants 436 8.279999999999998e-118   NTclustered gi|1360638125|gb|AC277041.1| 574566 g31358 i0 87.855 47.8780487804878 387 28 100 9 1 369 39896 39511 Coccomyxa subellipsoidea C-169 clone FAHX05-A01, complete sequence blastn 17667 436 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;